Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_C03
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 3.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 4.4
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.8
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 5.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 7.7
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 25 7.7
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.7
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 7.7
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 7.7
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.3
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Frame = +2
Query: 182 TDTERPSQKLISLGSVTK*RLPVKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTSTLSV-P 358
T + S L+ SV+ LP + PL T F +ST S P
Sbjct: 129 TPSSTESSSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPL-TSSTFSSLSSSTSSSQP 187
Query: 359 EWTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXXLTSTPVGRSSI 517
++ S P T S +++++ + + S LTS+ + SSI
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSI 240
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 330 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 229
+ IW V SG+C T E + V + + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/63 (20%), Positives = 25/63 (39%)
Frame = +2
Query: 332 FRTSTLSVPEWTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXXLTSTPVGRS 511
F T+ +S+ + +K L+ H P + +W + + +TP+G
Sbjct: 647 FGTANVSLQDLFAATKTGLLWFPLQHAPSGRVRMSVMWKPAQLNNDSISSMALATPIGAI 706
Query: 512 SIH 520
IH
Sbjct: 707 RIH 709
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 352 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 450
G+G +F DK G A F++ DYS G
Sbjct: 61 GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 265 HNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDK 384
H N SA ++ ++ PQ F+T G+ + F DK
Sbjct: 244 HRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDK 283
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 187 HGATLTKTHIPGFGDKMTAAGKV 255
HG T+ HI GD MT G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 7.7
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +1
Query: 469 TPTTSLDFNAGWKKFDTPFIKSSWEPSTSFS 561
+PT+S+ ++ W K+ T + W+ F+
Sbjct: 251 SPTSSVTVSSSWSKYLTSNVAKVWDTRKEFA 281
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 172 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 261
+N AT T T GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 164 WLMTT*TDTERPSQKLISLGSVTK*RLPVKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 343
WL+ ++TE P+Q+L +L S++K + + + T + KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251
Query: 344 TLS-VPEWTTCSKI 382
T E +CS +
Sbjct: 252 TAKYANELVSCSML 265
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 7.7
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 339 VRNLRNIWHVFSGEC 295
+ N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,076
Number of Sequences: 5004
Number of extensions: 51730
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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