Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_C01
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   3.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.2  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   9.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.2  

>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 25  KMSPSYSSYQFFWSASTAGTCSLKSLVTTL 114
           K++ SYS YQ+F SA     C    ++T L
Sbjct: 259 KLTDSYSLYQYFISAPDDLACKCLDMLTLL 288


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +3

Query: 150  SRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 323
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 324  -NVNGHGATLTKTHIPGFGDKMTAAGXV 404
              +  HG T+   HI   GD MT  G V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147  NSRVRRQAGALTVNSDGTSGAMVKVPITGNENH-RLSALGSVDLT 278
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 182 CQLRRHLRCYGQGTYNWKR 238
           C ++R L C  Q TYN +R
Sbjct: 186 CTVQRGLECLSQSTYNVER 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 192 DGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 371
           D +SGA++ V  T          GS+  T+ +     T+G   + V     T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,588
Number of Sequences: 5004
Number of extensions: 42390
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)