Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B24
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   2.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   3.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    26   3.0  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.8  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 16   WIPFWRQQRWNSIRGERMVDFRRTCAAF 99
            W  F+   RW +IR E + D    C AF
Sbjct: 1120 WFMFFSSSRWQAIRVECIGDLIIFCTAF 1147


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 322 SIQRQRLDPRKGTTRKFQRRTY 387
           SI +  L PR GT  +FQ RTY
Sbjct: 653 SIDKLSLCPRLGTCGRFQLRTY 674


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 276 MHYMKTLKHGHTTPPFHPASKT*ST*RNYQKVSEKNLYVTEQNPSHYRSH 425
           + Y+KT K       F PA+K  +     +K+  KN Y+ +     YRS+
Sbjct: 449 LRYLKTAKVSLNEFEF-PANKVANVQSQLEKLVSKNYYLQQSAKDGYRSY 497


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 354 RNYQKVSEKNLYVTEQNPSHYRS 422
           RNY  ++EK  YVT ++ SH+R+
Sbjct: 120 RNYL-LTEKGFYVTTRSISHFRA 141


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 290 NIKTWTHYSAFPSSVKDLIHVKELPESFREELIRNRTK 403
           N   W  + + P   KD++    + +S  E L+  RTK
Sbjct: 709 NYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTK 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,402
Number of Sequences: 5004
Number of extensions: 35738
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)