Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B24
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    28   3.8  
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829...    28   3.8  
04_03_0994 - 21514495-21515610                                         27   6.7  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   6.7  
03_01_0311 + 2453057-2454610                                           27   8.8  
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739...    27   8.8  

>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 152  PPADQIKATKSLIAAGVELGYISPQYKLVGHRQVRATECPGDALYENIKTWTHYSAFPSS 331
            P  D ++A   +IA  + LG+   ++++V H  +      G  L   +K+ TH+S  P++
Sbjct: 1163 PEKDPVEA---IIAHRLWLGFFIDRFEVVRHDSIEQLLLLGRMLQGTMKSATHFSHHPAA 1219


>02_02_0450 -
           10381360-10381391,10381737-10382283,10382770-10382952,
           10383123-10383863
          Length = 500

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
 Frame = -2

Query: 207 SSTPAAMRDLVALI*SAGGNETRQSPIRQMPMLTELKC--SACAPKVDHPLPSYTVPSLL 34
           ++T AA  +LVA   + G  +       ++PM   +KC  S   P ++HP  +   P+  
Sbjct: 219 ATTAAASMELVAARNAIGATDINNLDHPKVPMKCSMKCTESDNKPLMEHPKKNPWPPAWS 278

Query: 33  -TPKWY----PISHH 4
              KWY     I+HH
Sbjct: 279 GWKKWYMTWTAINHH 293


>04_03_0994 - 21514495-21515610
          Length = 371

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 131 GDWRVSLPPADQIKATKSLIAAGV--ELGYISPQYKLVGHRQVRATECP 271
           G  RV+LPP+D  +    L+A GV  ++ +       + HR V A   P
Sbjct: 173 GGRRVTLPPSDLARHLGGLLATGVGADVTFEVDGKTFLAHRNVLAARSP 221


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 17  GYHFGVSSDGTVYEGRGWSTLGAHALHFNS 106
           GY  G  + G+ Y GRG+ ++GA     NS
Sbjct: 656 GYRGGGRARGSYYGGRGYGSMGARGGQGNS 685


>03_01_0311 + 2453057-2454610
          Length = 517

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 210 PSSTPAAMRDLVALI*SAGGNETRQSPIRQMPMLTEL 100
           P S+PAA + LVA++ S GG ++++  + Q   L  L
Sbjct: 43  PVSSPAARQSLVAVV-SEGGEDSQRFLLEQEEQLRRL 78


>02_04_0525 -
           23672984-23673085,23673315-23673419,23673820-23673979,
           23674085-23674162,23674383-23674524,23674641-23674785,
           23674888-23674950,23675042-23675101,23675364-23675441,
           23675524-23675598,23675744-23675860,23675960-23676190,
           23676300-23676419,23676512-23676588,23676669-23676769,
           23676844-23676950,23677094-23677251,23677383-23677599
          Length = 711

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 8   WDIGYHFGVSSDGTVYEGRGWSTLGAHALHFNSVSIGICLIGDWRVSL--PPADQIKATK 181
           WD   H GV+  G   +GR  S +G   L  + +   I      RVSL  PP ++I   +
Sbjct: 307 WDYPLHLGVTEAGEGEDGRMKSAIGIGTLLMDGLGDTI------RVSLTEPPEEEIDPCR 360

Query: 182 SLIAAG 199
            L   G
Sbjct: 361 RLANLG 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,881,229
Number of Sequences: 37544
Number of extensions: 265036
Number of successful extensions: 876
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)