Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B24
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    27   4.6  
AF063007-4|AAC16429.3|  253|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short for...    27   6.0  
U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form...    27   6.0  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC024790-3|AAF60637.1|  446|Caenorhabditis elegans Hypothetical
           protein Y47D7A.6 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 60  PSYTVPSLLTPKWYPIS 10
           PSY+VPS   PK YP++
Sbjct: 344 PSYSVPSYTAPKKYPVA 360


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 290 FHIMHPRDI-PLLALAGVLPVCTVDLCSLARHQRR*GI 180
           F  +HP  I PL+A   V   C    CS+AR   R G+
Sbjct: 346 FSFVHPLSIAPLIAYGYVRYACQSPTCSIARRLARFGL 383


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 158 ADQIKATKSLIAAGVELGYISPQYKLVGHRQVRATE 265
           AD++K  ++   A +E   +SP+  +V HR V+A E
Sbjct: 411 ADELKTVRNSEVAPIENKPLSPEMMVVLHRLVKAKE 446


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 290 FHIMHPRDI-PLLALAGVLPVCTVDLCSLARHQRR*GI 180
           F  +HP  I PL+A   V   C    CS+AR   R G+
Sbjct: 346 FSFVHPLSIAPLIAYGYVRYACQSPTCSIARRLARFGL 383


>AF063007-4|AAC16429.3|  253|Caenorhabditis elegans Hypothetical
           protein R119.3 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 239 GHRQVRATECP---GDALYENIKTWTHYSAFPSSVKDLIHVKELPESFREEL 385
           G++   A +CP   G    +NIK     +AF   V +  H KEL     E+L
Sbjct: 25  GYKVAAAADCPNSVGKVAEDNIKVGGDVTAFSLDVANAEHRKELITKVAEKL 76


>Z71260-1|CAA95798.1|  744|Caenorhabditis elegans Hypothetical
           protein F15C11.1 protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 147 ETRQSPIRQMPMLTELKCSAC 85
           ET   P RQMP+L++ +C  C
Sbjct: 574 ETEPPPPRQMPVLSKHQCGVC 594


>U60113-1|AAB03334.1|  715|Caenorhabditis elegans SEM-4 short form
           protein.
          Length = 715

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 147 ETRQSPIRQMPMLTELKCSAC 85
           ET   P RQMP+L++ +C  C
Sbjct: 545 ETEPPPPRQMPVLSKHQCGVC 565


>U60112-1|AAB03333.1|  744|Caenorhabditis elegans SEM-4 long form
           protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 147 ETRQSPIRQMPMLTELKCSAC 85
           ET   P RQMP+L++ +C  C
Sbjct: 574 ETEPPPPRQMPVLSKHQCGVC 594


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 12  ILDTILASAAMEQYTRGEDGRL*AH 86
           I++ +LASAA  +++  EDG L  H
Sbjct: 154 IIEPMLASAAFREFSESEDGGLPEH 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,944
Number of Sequences: 27780
Number of extensions: 210005
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)