Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B24
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   0.85 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   0.85 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   4.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   4.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 AAGVELGYISPQYKLVGHRQVRATE 265
           + GV      PQ+K++GHRQ RA E
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQ-RAME 199


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 AAGVELGYISPQYKLVGHRQVRATE 265
           + GV      PQ+K++GHRQ RA E
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQ-RAME 138


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 170 KATKSLIAAGVELGYISPQYKLVGHRQVRAT 262
           K    L + G+      PQ++++GHRQ  +T
Sbjct: 169 KWNAGLQSVGISNEVELPQFRVLGHRQRHST 199


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +2

Query: 2   QWWDIGYHFGVSSDGTVYEGR 64
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = +2

Query: 2   QWWDIGYHFGVSSDGTVYEGR 64
           +W+D+G ++ + S+  +Y+ +
Sbjct: 55  EWYDVGRNYDMESNMDMYKDK 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,156
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)