Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B22
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    49   5e-07
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    48   7e-07
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   2e-04
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    28   0.83 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.5  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   5.9  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.9  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +1

Query: 82  LDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD---NDFCVAESRVIIRYLASKYG- 249
           LDL      V+F+     SPE+L LNP   VP L+D   ND+ + ES  I+ YLA KY  
Sbjct: 25  LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDT 84

Query: 250 ENSNLYPEDLQARAKVDYILDF 315
           E     P D     KV   L F
Sbjct: 85  ERKISLPRDHPEYYKVIQYLFF 106


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query: 61  VLLTAAILDLKINKIVVDFANGVHLSPEYLKLNPQHTVPILVD---NDFCVAESRVIIRY 231
           V+L    L+L   +I  DF  G     E+L LNP   VP LVD   ND+ + ES  I+ Y
Sbjct: 18  VVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIY 77

Query: 232 LASKY 246
           LA KY
Sbjct: 78  LADKY 82


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +1

Query: 139 PEYLKLNPQHTVPILVDNDFCVAESRVIIRYLASKYGENSNLYPEDLQARAKVDYILDFD 318
           P Y KL+P    PI+VD+     ES  I+ +L  KYG +     ED+    K +  + F 
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99

Query: 319 LGSL 330
             SL
Sbjct: 100 EASL 103


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 365 YMAVLHRPMLGSRSYNINSKS*IV 436
           Y A++++PMLG+R +N +SK  IV
Sbjct: 42  YHAIVNQPMLGARIHNCHSKIPIV 65


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 239 LAKYLMITRDSATQKSLSTRIGTVCCGLSFKYSGERCTPLAKSTTILFILRSN 81
           +A Y + TR+   + SL +++ ++C     KY+    T L   TT L+ L  N
Sbjct: 366 IAIYSVETRECIKKISLQSKVTSICLSKDSKYA---LTNLEPHTTFLWDLEEN 415


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
 Frame = -1

Query: 296 TLALAWRSSGYRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCG------LSFKY--- 144
           T  +  R  G+ L+FSP+     L + R            GT+C        LS  Y   
Sbjct: 179 TTNVTHRGIGFSLIFSPFAALTRLYLAR-FLNSPQYFIPYGTLCANVFATLLLSIMYMIP 237

Query: 143 SGERCTPLAKSTTILFILRSNIAAVNSTV 57
               CTP+++S  +++ +++   AV ST+
Sbjct: 238 QITHCTPVSRS--VMYGIQNGFCAVLSTL 264


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
 Frame = -1

Query: 296 TLALAWRSSGYRLLFSPYLLAKYLMITRDSATQKSLSTRIGTVCCG------LSFKY--- 144
           T  +  R  G+ L+FSP+     L + R            GT+C        LS  Y   
Sbjct: 179 TTNVTHRGIGFSLIFSPFAALTRLYLAR-FLNSPQYFIPYGTLCANVFATLLLSIMYMIP 237

Query: 143 SGERCTPLAKSTTILFILRSNIAAVNSTV 57
               CTP+++S  +++ +++   AV ST+
Sbjct: 238 QITHCTPVSRS--VMYGIQNGFCAVLSTL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,389
Number of Sequences: 5004
Number of extensions: 46082
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)