Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B20
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 28 0.63
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 1.9
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.9
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 4.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 5.9
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 5.9
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 25 5.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 7.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 7.8
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 24 7.8
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 0.63
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 77 NRHGATLTNTHIP-GIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 247
N+ T T+T G GDK S AGK N+ + S + + S+ PS N+V
Sbjct: 252 NKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 1.9
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +2
Query: 119 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVSGGLEYMFKDKIGASAS 298
I ++ G L NN AF + + T + S+++++ GL+ + K
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256
Query: 299 AAHTDFFNKN 328
+ T FF +N
Sbjct: 257 SNATSFFGEN 266
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 1.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 178 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 77
I V + + F ++ S N+SV EGSS+ +
Sbjct: 73 IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 4.5
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 213 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 305
P F + + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.6 bits (51), Expect = 5.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 183 PRRRSRPEICPPFPI 227
PRRR RP PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 5.9
Identities = 7/32 (21%), Positives = 20/32 (62%)
Frame = +2
Query: 152 NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 247
++ H + H L++ +F+T+ + T + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 146 KVNLFHNND-HDLSAKAFATRNMPTISHLPSTNTVS 250
++NL ++D H + F TRN PT S S++ S
Sbjct: 214 QLNLSSSSDSHSAQNEFFQTRNTPTFSFSSSSSQTS 249
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 225 IYHQPTLLVVVSNICSRTRSVHQ 293
+YHQ TL + ICS+ ++V Q
Sbjct: 2124 LYHQLTLYQLQDLICSKCKTVKQ 2146
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 288 APILSLNIYSRPPLTVLVDGKWEMVGIFLVAN 193
A + +LNI RPPL VL + + ++ L++N
Sbjct: 221 ASLRNLNINDRPPLPVLKNSERNLLHRQLLSN 252
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 204 EICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLT 323
EICP Q L +C R +H+ L+ +S+T
Sbjct: 655 EICPVTYSIEQEKKLEKYKRVCLRGLDIHRNRRLSQLSVT 694
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,348
Number of Sequences: 5004
Number of extensions: 35472
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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