Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B20
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         31   0.26 
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   1.4  
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    27   5.6  
02_01_0011 + 78277-78487,78594-79417                                   27   7.5  
10_08_0359 - 17167829-17169595,17169976-17169996                       26   9.9  
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942...    26   9.9  
07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893     26   9.9  
07_01_1106 - 10187609-10190041,10190292-10191932                       26   9.9  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 186 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 278
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 200 SRTPSRINHGRCYETGSLYQQQTI 129
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 158 FHNNDHDLSAKAFATRNMPTISHLPSTNTVSGGLEYMFKDKIG 286
           F NND  +     A  N P ++   + N   G +EY+F DK G
Sbjct: 375 FINNDLHMY---HAESNTPALARTSNLNEELGQVEYIFSDKTG 414


>02_01_0011 + 78277-78487,78594-79417
          Length = 344

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 185 AKAFATRNMPTISHLPSTNTVSGGLE 262
           A+  A   MP I  +PS  T+SGG+E
Sbjct: 198 ARKVAIIGMPPIGCVPSQRTMSGGME 223


>10_08_0359 - 17167829-17169595,17169976-17169996
          Length = 595

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 215 WAYFWSRTPSRINHGRCYETG 153
           W YF   TP     G+CYE G
Sbjct: 359 WGYFPDNTPEPHIPGKCYEGG 379


>09_04_0184 -
           15393441-15393642,15393789-15393940,15394047-15394208,
           15394372-15394585,15395017-15395297
          Length = 336

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 234 DGKWEMVGIFLVANAFADKSWSLL 163
           D  W   GI+L+ NAF    W +L
Sbjct: 141 DDDWVKGGIYLIGNAFCVSIWYIL 164


>07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893
          Length = 342

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 222 PIYHQPTLLVVVSNICSRTRSVHQRAPLTLISL 320
           P  H+P   VV +  C+RT +V   A L L S+
Sbjct: 123 PATHKPLAEVVAAAACARTPAVFSDAELILSSI 155


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 221 KWWAYFWSRTPSRINHGRCYE 159
           +WW Y W  T   +   RC++
Sbjct: 533 RWWKYNWVHTQCNLKSYRCHQ 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,452
Number of Sequences: 37544
Number of extensions: 248387
Number of successful extensions: 523
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)