Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B20
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    27   5.1  
U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    26   9.0  
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 212 PTISHLPSTNTVSGGLEYMFKDKIGASASAAHTDF 316
           P +    S    S GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 5    LGSVDLTNQIKLGAATAGLVYDNVNRHGATLTNTHIPGIGD 127
            +G VDL+    LG A    + DNV+ HG  L +   P +GD
Sbjct: 1832 IGKVDLSQNSSLGMAK---LLDNVSVHGILLDSIMDPTVGD 1869


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 291 DAPILSLNIYSRPPLTVLVDGKWEMV 214
           + PI   NI   PPLT L++G W  V
Sbjct: 87  ETPITKCNI--APPLTYLINGSWNAV 110


>U21318-1|AAC46669.1|  457|Caenorhabditis elegans Hypothetical
           protein K03H9.3 protein.
          Length = 457

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 145 TSNRQFISNSRNMSVCEGSSVAVD 74
           T+N  FIS ++N+S+C    +A D
Sbjct: 165 TANATFISIAKNLSICSTECIAKD 188


>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 156 CFITTTMIYPRRRSRPEICPPFPIYHQ 236
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 156 CFITTTMIYPRRRSRPEICPPFPIYHQ 236
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,799,689
Number of Sequences: 27780
Number of extensions: 202382
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)