Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B17
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    31   0.071
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.093
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    30   0.22 
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   1.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.0  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   3.5  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   6.1  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   6.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.1  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 31.5 bits (68), Expect = 0.071
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -3

Query: 216 FPILLPGVLDSLIVSFDETFEDRWVVLLKEEPRPVGLSAPGIYPREALSPQLCRRLILLC 37
           FP  +P V +   +S +ETF+    +L +    PVG+S+  +       P   R+++  C
Sbjct: 10  FPSDIPAVNEESKLSAEETFKSLSEILAENSTLPVGISSIRVTGAHHTRPSFIRKVLKTC 69


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.093
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 92  IPGAERPTGRGSSFRRTTQRSSNVSSKETIRESSTP 199
           +PG   P GR ++ RRT  +SS   +K T  +SS P
Sbjct: 446 LPGLAAPIGRKNTLRRTPAKSSE-EAKSTTNDSSPP 480


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 212 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 325
           G+L  G    LL  +   PWY  D  R+TRA     L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 439 NWKGLPSIGVFSCVFAGDADE 377
           N  G+P +G   C F GD+DE
Sbjct: 666 NMMGIPMVGADVCGFLGDSDE 686


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 30  SKSIAVLSACIIVGSALPVDKYPVLKDQPXE 122
           SKSIA L  CI +G + P  K PV+K Q  E
Sbjct: 57  SKSIAKLDLCIELGRSYPYVK-PVIKLQNGE 86


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 116 GRGSSFRRTTQRSSNVSSKETIRESSTPGKRMGNLSTGRSI--TLLSAKMKDPWYS 277
           G+ ++   TTQ+  N+ S   +  +S+P ++ G   + +++  + LS+   D  Y+
Sbjct: 258 GKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKSKKALPTSPLSSSSPDASYN 313


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +3

Query: 96  PVLKDQPXEVPPSGEQPNGPRMSHRRKRSGSQVLLAKGWEIFQLAGA*RCSPQR*RIPGI 275
           PV       V  S   P   R S   KR+GS         + Q +G  R   +  ++PG+
Sbjct: 48  PVTAPAAQPVESSVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSGEKRTPEEPRKLPGV 107

Query: 276 P 278
           P
Sbjct: 108 P 108


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 439 NWKGLPSIGVFSCVFAGDADE 377
           N  GLP +G   C F G+ DE
Sbjct: 688 NMVGLPMVGADVCGFMGNTDE 708


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 191 STPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKRLTRA-NTNASLKPQPVLPARG 352
           + P  R+G  ++ RS   L+  MKDP     R   T A   N    P P  P  G
Sbjct: 85  AVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPGPFPG 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,967
Number of Sequences: 5004
Number of extensions: 45354
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)