Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B17
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.38
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 29 1.5
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551... 29 2.0
01_06_0710 + 31384519-31385493 29 2.0
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 2.6
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 29 2.6
09_06_0216 + 21627238-21627834 28 3.5
08_01_0422 + 3737429-3738006,3738083-3738824 28 3.5
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 4.6
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 4.6
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 28 4.6
05_03_0514 - 14921653-14921760,14921992-14922054,14922162-149223... 28 4.6
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 6.1
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 27 6.1
05_01_0494 - 4120996-4121011,4121152-4121483,4122560-4122706,412... 27 6.1
08_02_1595 - 28114751-28114858,28115018-28115283,28116609-281167... 27 8.1
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 274 FLRPQASDEGQYQCFAETPAGVASSRVIS 360
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 42 AVLSACIIVGSALPVDKYPVLKDQPXEVPPSGEQPNGPRMSHRRKRSGS 188
AV +A VG L V P +D P E+PPS + P S R + GS
Sbjct: 38 AVDAAAEAVGR-LDVSACPTAEDAPVELPPSSQPPLEASSSGRDELGGS 85
>08_01_1072 +
10954080-10954851,10954956-10955027,10955108-10955191,
10955285-10955353,10955814-10955916,10956033-10956107,
10956204-10956366,10956502-10956571,10956649-10956735,
10956795-10956836,10956904-10956969,10957201-10957275,
10960149-10960271,10960683-10960966
Length = 694
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 198 LAKGWEIFQLAGA*RCSPQR*RIPGIPETASV*RGPIPMLR*NPSRCCQLEGDQLQEDLP 377
+A+ W +F L A +C QR G T + + + + QE+ P
Sbjct: 595 VARVWAVFMLVVAMKCYQQRMMEYGWSSTVEDSQ--------EATAAATGDDESPQEETP 646
Query: 378 SSASPAKTHEKTPIEG 425
+ +SPAK H+ P +G
Sbjct: 647 ARSSPAKAHDHEPAQG 662
>01_06_0710 + 31384519-31385493
Length = 324
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 78 LPVDKYPVLKDQPXEVPPSGEQPNGPRMSHRRKRSG 185
+P P LK P +P ++ PR RR+RSG
Sbjct: 172 VPAPFVPALKTTPPLLPSDTDEEKRPRSRRRRRRSG 207
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 78 LPVDKYPVLKDQPXEVPPSGEQPNGPRMSH 167
LPV P P +PP QP GP MSH
Sbjct: 510 LPVPLMPPPPFGPLGLPPGPMQPIGPNMSH 539
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 48 LSACIIVGSALPVDKYPVLKDQPXEVP 128
L AC + G+ LP+D++ KD P
Sbjct: 605 LGACALAGTGLPIDRFKTAKDLKFTAP 631
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 162 SHRRKRSGSQVLLAKGWEIFQLAG 233
SH RKR+ +Q +LAK ++F AG
Sbjct: 108 SHYRKRAAAQDVLAKAQDVFNQAG 131
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 196 SWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF--AETP 330
SWQ G+ W++ A R+D V LR + +GQ C AETP
Sbjct: 282 SWQPWGRLEAWRDQGGAARQD---TVCLRLRLLPDGQDACMLVAETP 325
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 236 CSCQLKDFPSFCQEYLTP*SFPSMRHSRTVGLF 138
C+C++ F ++C + + P + + HS LF
Sbjct: 390 CACEIAMFDTYCSKQMLPMRYGKIDHSSNTTLF 422
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 263 PSSLRRAALCSCQLKDFPSFCQ 198
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 115 RXRFLLQENNPTVLECLIEGNDQGVKYSWQKDG 213
R + LLQ NP ++ G QG+KY W+ +G
Sbjct: 66 RMKILLQVQNPHSIK--YNGTIQGLKYIWRTEG 96
>05_03_0514 -
14921653-14921760,14921992-14922054,14922162-14922365,
14923318-14923369,14924099-14924706
Length = 344
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 331 AGVASSRVISFRKTYPHPHRQRRHTRKRQS 420
A A++ +SF + P P + RRH +R+S
Sbjct: 5 AAAAAAAALSFPRALPSPLQPRRHRHRRRS 34
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 211 GKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETP 330
GK++ W + + DEG ++F P +E Y AE P
Sbjct: 178 GKNWVWARNTDQV-SDEGDILFETPDIEEEHFYSLAAENP 216
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 41 SSIKRLHNCGLSASRG*IPGAERPTGRGS----SFRRTTQRSSNVSSKETIRESSTPGKR 208
S+I G S+S +PG R T S S R++ RSS + + +R S+ R
Sbjct: 220 STISATSRPGSSSSN--VPGISRATSLSSSTVPSMSRSSSRSSTPTRQPAMRSSAPAVGR 277
Query: 209 MGNLSTGRSITLLSAKMKDP 268
++ SI+ L++ + P
Sbjct: 278 SPSVGRSSSISSLTSSINRP 297
>05_01_0494 -
4120996-4121011,4121152-4121483,4122560-4122706,
4122818-4122871,4123203-4123367,4125516-4125827,
4125992-4126078,4126202-4126411
Length = 440
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 81 PVDKYPVLKDQPXEVPPSGEQPNGPRMSHRRKRS 182
P ++P L+ Q E PPS R RR+RS
Sbjct: 86 PAFEHPRLRGQKPEEPPSARPTETTRRRRRRRRS 119
>08_02_1595 -
28114751-28114858,28115018-28115283,28116609-28116703,
28117179-28118154,28118245-28118369,28118443-28118569,
28118606-28118843
Length = 644
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +2
Query: 95 PGAERPTGRGSSFRRTTQRSSNVSSKETIRESSTPGKRMGNLSTGRSITLLSAKMKDPWY 274
P E P RGS ++ S + +KE TP + +S TLL +
Sbjct: 181 PPEESPHSRGSQEGCSSSSSPSAVTKEASPPPPTPQPQQ----QAQSATLLPSSSASTNR 236
Query: 275 S*DRKRLTRANTNASLKPQP 334
D+ R R+ ++ ++ P+P
Sbjct: 237 EDDQCRTPRSGSSGNMSPEP 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,602
Number of Sequences: 37544
Number of extensions: 340590
Number of successful extensions: 1205
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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