Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B17
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    32   0.004
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.027
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.061
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.57 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.0  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 31.9 bits (69), Expect = 0.004
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
 Frame = +1

Query: 148 TVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDE-GSLVFLRPQASD-EGQYQCFA 321
           T L C +   D  +  SW KDG++    E       D+  S++ +   + D  G Y C A
Sbjct: 628 TTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCVA 687

Query: 322 ETPAGVAS 345
              A   S
Sbjct: 688 RNLAAEVS 695



 Score = 24.6 bits (51), Expect = 0.57
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 295 DEGQYQCFAETPAGVASSRV 354
           D G Y+C A  P G AS+ +
Sbjct: 304 DNGIYRCSASNPGGEASAEI 323



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 DEGQYQCFAETPAG 336
           D G+Y C AE  AG
Sbjct: 493 DGGEYSCMAENRAG 506


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +1

Query: 145 PTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF 318
           P    C + GN      SW KDGK    +E  A LR +         +  D+G YQCF
Sbjct: 324 PATFTCNVRGNPIKT-VSWLKDGKPLGLEE--AVLRIES-------VKKEDKGMYQCF 371



 Score = 27.1 bits (57), Expect = 0.11
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
 Frame = +1

Query: 151 VLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRK--DEGSLVFLRPQASDEGQ------ 306
           V+EC   GN Q      + DG +         LR+    G+LVF   +A D  Q      
Sbjct: 22  VVECQARGNPQPDIIWVRADGSAVG---DVPGLRQVLPNGNLVFPPFRAEDYRQEVHAQV 78

Query: 307 YQCFAETPAGVASSRVISFR 366
           Y C A +PAG   SR ++ R
Sbjct: 79  YSCLARSPAGSVHSRDVNVR 98



 Score = 25.8 bits (54), Expect = 0.25
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 259  EGSLVFLRPQASDEGQYQCFAETPAG 336
            EGSL       +D G+Y C+ E   G
Sbjct: 1328 EGSLFIKEVDRTDAGEYSCYVENTFG 1353



 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +1

Query: 238 NAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSRVI 357
           N  +R+  G+L+    +  D G+Y C      G  S   +
Sbjct: 262 NERVRQVSGTLIIREARVEDSGKYLCIVNNSVGGESVETV 301



 Score = 25.4 bits (53), Expect = 0.33
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 238 NAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSRVISFRKTYPHPH 387
           N  +  ++G+L     Q ++EG Y C A    G   S VI F      PH
Sbjct: 730 NPDISVEDGTLSINNIQKTNEGYYLCEAVNGIGAGLSAVI-FISVQAPPH 778



 Score = 21.4 bits (43), Expect = 5.3
 Identities = 11/55 (20%), Positives = 21/55 (38%)
 Frame = +1

Query: 292 SDEGQYQCFAETPAGVASSRVISFRKTYPHPHRQRRHTRKRQSKAGLSNWTVVQP 456
           SD+  Y C A    G ++   +  +   P   +Q   T+   +    +N   + P
Sbjct: 554 SDQATYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLPMNAGEFANLQCIVP 608


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.061
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +1

Query: 130 LQENNPTVLECLIEGNDQGVKYSWQKDGKS-F----NWQEHNAALRKDEGSLVFLRPQAS 294
           L E   T   C +   D  +  SW KDG+S F    N    N +      SL+ +   A+
Sbjct: 622 LSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPYSSLLSITNLAA 681

Query: 295 D-EGQYQCFAETPA 333
           +  G Y C A  PA
Sbjct: 682 EHSGDYTCVAANPA 695



 Score = 24.6 bits (51), Expect = 0.57
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 295 DEGQYQCFAETPAGVASSRV 354
           D G Y+C A  P G AS+ +
Sbjct: 304 DNGIYRCSASNPGGEASAEI 323



 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 DEGQYQCFAETPAG 336
           D G+Y C AE  AG
Sbjct: 493 DGGEYSCMAENRAG 506


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.57
 Identities = 17/72 (23%), Positives = 26/72 (36%)
 Frame = +1

Query: 199 WQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFAETPAGVASSRVISFRKTYP 378
           W+++G              ++GSL   + Q    G Y C A     V  + V++   T P
Sbjct: 344 WRRNGADLETLNEPEIRVFNDGSLYLTKVQLIHAGNYTCHAVRNQDVVQTHVLTIH-TIP 402

Query: 379 HPHRQRRHTRKR 414
                 R   KR
Sbjct: 403 EVKVTPRFQAKR 414



 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 354 DQLQEDLPSSASPAKTHEKTPIEGRPFQLDCCAAE 458
           D L   +P S   +  HE++ +      +D CA++
Sbjct: 51  DSLSMTIPPSIDRSSIHEESYLAESSRSIDPCASK 85


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 310 GIGPRQTLAVSGIPGILHLCG 248
           GIGP++ L   GIP ++ L G
Sbjct: 334 GIGPKEHLRSLGIPVVVDLPG 354


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 347 ELATPAGVSAKHWYWPSSDACGLRNTRDPSSLRRAALC 234
           EL+ P  ++     + SSD C  R  + P+  ++  LC
Sbjct: 154 ELSQPGSLNG----YGSSDGCDARKKKGPTPRQQEELC 187


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 373 YPHPHRQRRHTRKRQSK 423
           Y H H Q RH+ K  ++
Sbjct: 425 YNHNHNQARHSSKSDNQ 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,637
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)