Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B15
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 30 0.24
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 30 0.32
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 29 0.74
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 29 0.74
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 27 2.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 27 3.0
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 5.2
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 6.9
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 9.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 9.1
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 30.3 bits (65), Expect = 0.24
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 263 TVGYTRHSLFRSSSTAVLEKTSCRRVSPP---TMSIMTKLNTTNIISGFVSCSSFKRS 427
TV Y RHSLFRS T+ T ++ P ++ + +N + FVS + K S
Sbjct: 460 TVIYIRHSLFRSKLTSYFMGTKPLQLRDPDYYSLKDFANQDDSNSVDDFVSFKTLKES 517
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 29.9 bits (64), Expect = 0.32
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 498 EIKNQHFHTAAFPHFPQVARNVKQDRLKEEHETNPLIIFVVFNFVMID 355
E+ + F A+P+ ++ + VKQ K++ + P+I+F + ID
Sbjct: 212 ELSPEDFTEYAYPYLVRICQEVKQHLKKKKRDEVPMIVFAKGAWYAID 259
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 28.7 bits (61), Expect = 0.74
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 328 VQAGVASYDVDHDKVKYHKYYQWVCFVLF 414
VQ + Y VD+ K+ YH +YQ +C F
Sbjct: 488 VQHNIGLYVVDYGKLSYHLFYQ-ICLTEF 515
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 28.7 bits (61), Expect = 0.74
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = -1
Query: 462 PHFPQVARNVKQDRLKEEHETNPLIIFVVFNFVMIDIVGGDTRLHDVFSNTAVELLRNSE 283
P F N+ + K+ +N LI F NFV D VGGD + VE L +
Sbjct: 523 PRFLSTMDNIMKPLEKDGLMSNGLI-FRYNNFVYEDGVGGDEGAFTMVCFWLVEALAMAG 581
Query: 282 CRVYP 268
C YP
Sbjct: 582 CSGYP 586
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 313 VGKDVVQAGVASYDVDHDKVKYHKYYQWVCFVL 411
VG+D++Q GV SY VD + Y+ W+ L
Sbjct: 81 VGQDLLQEGVTSYMVD------YMYFSWILIFL 107
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 448 LWKMWEGGRMKMLVLDLNCPILDESCKNDRKKLLVDYFYSDLNTQ 582
+W + G +K LV +N P+ + +RK LLV S+LN+Q
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLV----SNLNSQ 246
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 425 SCFTFLATCGKCGKAAV*KCW 487
S T LA CG C K ++ CW
Sbjct: 233 SSITNLAYCGYCSKPSMGACW 253
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 526 KNDRKKLLVDYFYSDLNTQNV 588
KNDRK L D+FY D N Q +
Sbjct: 606 KNDRKTLH-DFFYQDDNKQGI 625
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 352 DVDHDKVKYHKYYQWVCFV 408
D+D D + H+ WVC++
Sbjct: 308 DLDQDMAELHRRIFWVCYI 326
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 355 VDHDKVKYHKYYQWVCFVLFFQAIL-FYVPRYLWKMWE 465
++++ + Y+ W C + F QA L FYV L+ M E
Sbjct: 1373 INNEAFNWRVYFGW-CSIAFIQAFLVFYVTYSLFGMKE 1409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,159
Number of Sequences: 5004
Number of extensions: 50970
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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