Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B15
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 33 0.25
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847... 32 0.33
08_01_0568 - 5052608-5052937 31 0.58
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786... 29 4.1
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 29 4.1
04_04_0649 + 26949063-26949232,26949398-26949518,26949610-26949846 29 4.1
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789... 28 5.4
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 28 5.4
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 28 7.1
03_01_0303 + 2369607-2371958 28 7.1
02_05_0493 + 29484285-29484467,29484757-29484900,29485014-294850... 28 7.1
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 27 9.4
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 27 9.4
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 9.4
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 27 9.4
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -2
Query: 233 STIQSMGSPIYCFEVTRSEHAIKMI--TVAL*CKRNTLLSMHTVSSLSNFFTEPNTSNMV 60
ST + +P Y + T++EH +M+ + + ++ ++ V+ + FFT+ + V
Sbjct: 255 STPKPNPNPFYYEQQTKTEHHFEMVDGVIHVYPNKDAKERIYPVADATTFFTDMHYILRV 314
Query: 59 AAAVAQRVVCYRR 21
AA R VCY+R
Sbjct: 315 LAAGDIRTVCYKR 327
>01_06_0555 -
30182818-30183169,30183268-30183674,30183804-30184773,
30184829-30184902,30184941-30185084,30185186-30185365,
30185448-30185988,30186081-30186538,30187723-30187901,
30187998-30188052,30188217-30188468
Length = 1203
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1
Query: 447 VARNVKQDRLKEEHETNPLIIFVVFNFVMIDIVGGDTRLHDVFSNTAVELLRNS 286
V NV +D K +H++ + I V+N M+ G +++ +F +T E L+ +
Sbjct: 806 VLSNVSRDLAKAQHQSTQIAIEAVYNHRMVTSFGCSSKVLQLFEHTQEEPLKRA 859
>08_01_0568 - 5052608-5052937
Length = 109
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 313 VGKDVVQAGVASYDVDHDKVKYHKY-YQWVCFVLFFQAILFYVPRYLWKMWEG 468
VG G S DVD +K++ H+ + V + +AIL + R W++WEG
Sbjct: 8 VGMGAWSQGGGSRDVDEEKIRCHRLGSESVSPLELREAILGDLGRRWWRVWEG 60
>09_06_0195 -
21477817-21478119,21478216-21478366,21478459-21478696,
21478786-21478996,21479162-21479361,21479453-21479545,
21479722-21481093
Length = 855
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 445 YLWKMWEGGRMKMLVLDLNCPILDESCKNDRKKLLV 552
Y W +W GR K LV DLN + ESC D L +
Sbjct: 755 YAWSLWMEGRAKELV-DLN---ITESCTLDEALLCI 786
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 466 GGRMKMLVLDLNCPILDESCKNDRKKLLVDYFYSD 570
G + + L LD++CPILD + ++D L F+S+
Sbjct: 119 GHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSE 153
>04_04_0649 + 26949063-26949232,26949398-26949518,26949610-26949846
Length = 175
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 598 GTHKRFACSNQSKSSLRVTSYGRSYRIRREWD 503
G H F CS+ + R+ + R + +R+ WD
Sbjct: 91 GNHVSFQCSDMAVMKARLRAMDREFVVRKVWD 122
>10_08_0531 +
18576913-18578058,18578724-18578843,18578924-18578970,
18579588-18579630
Length = 451
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -3
Query: 604 RNGTHKRFACSNQSKSSLRVTSYGRSYRIRREWDS*DQEPAFSYG 470
++G+H C +S + ++ + + R+W S DQ+ S G
Sbjct: 224 QDGSHGLDECDTYEQSDFAIVNFSYTIELGRKWSSDDQDLPISAG 268
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -2
Query: 275 CIQQ*VSITLFGISSTIQSMGSPIYCFEVTRSEHAIKMITVAL*CKRNTLLSMHTVSSLS 96
C+ + + + G T+ +G+ +Y F +EHA+ + L R L V+S+
Sbjct: 17 CVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSAARVPALVPCRVASV- 75
Query: 95 NFFTEPNTSNMVA 57
+ +P+T + A
Sbjct: 76 RYMADPDTDEVFA 88
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1
Query: 510 NGTVEIKNQHFHTAAFPHFP---QVARNVK--QDRLKEEHETNPLIIFVVFNFVMIDIVG 346
+GTV ++N + PH QVA +++ + H+ NP + V + + G
Sbjct: 54 DGTVHVRNSY----VVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGWFSTGFGVSG 109
Query: 345 GDTRLHDVFS 316
G T +HD +S
Sbjct: 110 GSTLIHDFYS 119
>03_01_0303 + 2369607-2371958
Length = 783
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 266 VGYTRHSLFRSSS-----TAVLEKTSCRRVSPPTMSIMTKLNTTNII 391
+GYT +F+ + TAVLE+ + ++ P++S+ K NTT+ +
Sbjct: 649 LGYTHMEIFKITHAGVNCTAVLERNAGFSLNYPSISVAFKTNTTSAV 695
>02_05_0493 +
29484285-29484467,29484757-29484900,29485014-29485088,
29485167-29485354,29485441-29485606,29485698-29486099,
29486210-29486341
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 384 FVVFNFVMIDIVGGDTRLHDVFSNTAVELLRNSECRVYPTVS 259
F F+ D +R+ + S A +LLRN+ +VYP+VS
Sbjct: 321 FSFLPFLPTDSSADWSRVLNSLSQNAKDLLRNTSNKVYPSVS 362
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -3
Query: 451 TGSEERKTGSLERRARNKPT 392
TG+++RK+G++ R +NKPT
Sbjct: 385 TGAKKRKSGNVRRFEQNKPT 404
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 260 LTVGYTRHSLFRSSSTAVLEKTSCRRVSPPTMSIMTKLNTTNIISGFVSCSSFKRSCF 433
L ++ + S S+A+ +K+S + + P M KL S ++ S+K +CF
Sbjct: 203 LDASFSSRTRTASGSSAIFQKSSLKSIRKPYMPTQRKLLKLCNCSVEMTRKSYKDACF 260
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 538 KKLLVDYFYSDLNTQNVYAFRFFICEVLNF 627
K L+ Y Y L QN + + +IC NF
Sbjct: 334 KTTLIQYIYKSLEVQNHFQVKVWICVSQNF 363
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = -1
Query: 321 FSNTAVELLRNSECRVYPTVSVHYIVRYIVDDTVDGVTNILF*SNEK*TCDQDDYSSFVV 142
FS E +R + YP V HY+ ++ I++ K + ++ DY SF+
Sbjct: 548 FSIYVGECVRYTRINSYPFVDWHYVHNNSLEGIQKPPVKIVYARRNKRSMEKQDYKSFLE 607
Query: 141 QAEHIVVDAHSVELEQ 94
+ ++A V Q
Sbjct: 608 KQHQKEMEAAIVGQRQ 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,806
Number of Sequences: 37544
Number of extensions: 306106
Number of successful extensions: 865
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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