Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B14
         (102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   1.8  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   1.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    22   9.4  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 94  LRGEMPWSPRVAGGLLLSGPSCRIPAAPGDP 2
           ++G  P  P + G LL SGP    PA  G P
Sbjct: 80  VQGPPPMDPSMRGSLL-SGPGVARPAGRGIP 109


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +3

Query: 39 PLSNNPPATR-GDH 77
          PLSNNPPA R  DH
Sbjct: 9  PLSNNPPAARTHDH 22


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 82  MPWSPRVAGGLL 47
           +PWSPRV G  L
Sbjct: 256 LPWSPRVFGPTL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,508
Number of Sequences: 5004
Number of extensions: 4321
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)