Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B14
         (102 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0164 - 27134750-27134985,27136200-27136311,27137394-271374...    25   6.2  
08_01_0422 + 3737429-3738006,3738083-3738824                           25   8.3  
07_03_1721 - 29023979-29025295                                         25   8.3  

>01_06_0164 -
           27134750-27134985,27136200-27136311,27137394-27137474,
           27137779-27137850,27138338-27138412
          Length = 191

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHGISPL 92
           G  GAA  RH+G  S+      G  G +PL
Sbjct: 134 GGGGAAQHRHDGAYSHGSRMVEGGAGAAPL 163


>08_01_0422 + 3737429-3738006,3738083-3738824
          Length = 439

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 2   WIPRRCRNSARGSAE*QPACHAWRPW 79
           W+  R   +A GS     A  +W+PW
Sbjct: 261 WLIARAGATAPGSTSSSAAVESWQPW 286


>07_03_1721 - 29023979-29025295
          Length = 438

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 79  PWSPRVAGGLLLSGPSCRIPAAPGD 5
           PWSP   G   ++ P C  PA P +
Sbjct: 252 PWSPAWNGIPAMAPPVCTAPAEPAN 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,007,494
Number of Sequences: 37544
Number of extensions: 50771
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)