Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B14
         (102 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ...    28   4.8  
DQ272660-1|ABB83829.1|  166|Homo sapiens HES5 protein.                 28   4.8  
BC087840-1|AAH87840.1|  172|Homo sapiens HES5 protein protein.         28   4.8  
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen...    28   4.8  
AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.              28   4.8  
BC023278-1|AAH23278.1|  420|Homo sapiens hypothetical protein MG...    27   8.4  
BC008985-1|AAH08985.1|  420|Homo sapiens hypothetical protein MG...    27   8.4  
AL050341-5|CAI20432.1|  225|Homo sapiens collagen type IX alpha ...    27   8.4  

>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 chain
            protein.
          Length = 1670

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 3    GSPGAAGIRHEGPLSNNPPATRGDHGISPLKND 101
            G PG AG + E  L   PP  RG+ G    K D
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD 1193


>DQ272660-1|ABB83829.1|  166|Homo sapiens HES5 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 26  SARGSAE*QPACHAWRPW 79
           +A  +A  QPAC  WRPW
Sbjct: 149 TAAAAAAHQPACGLWRPW 166


>BC087840-1|AAH87840.1|  172|Homo sapiens HES5 protein protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 26  SARGSAE*QPACHAWRPW 79
           +A  +A  QPAC  WRPW
Sbjct: 155 TAAAAAAHQPACGLWRPW 172


>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
            protein.
          Length = 1670

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 3    GSPGAAGIRHEGPLSNNPPATRGDHGISPLKND 101
            G PG AG + E  L   PP  RG+ G    K D
Sbjct: 1161 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD 1193


>AC097662-1|AAY24251.1| 1084|Homo sapiens unknown protein.
          Length = 1084

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHGISPLKND 101
           G PG AG + E  L   PP  RG+ G    K D
Sbjct: 575 GIPGPAGEKGETGLLRAPPGPRGNPGAQGAKGD 607


>BC023278-1|AAH23278.1|  420|Homo sapiens hypothetical protein
           MGC24975 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHGISP 89
           G PG    +  GP S  PP  R D G +P
Sbjct: 391 GKPGRKARQPAGPASATPPGPREDLGATP 419


>BC008985-1|AAH08985.1|  420|Homo sapiens hypothetical protein
           MGC24975 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHGISP 89
           G PG    +  GP S  PP  R D G +P
Sbjct: 391 GKPGRKARQPAGPASATPPGPREDLGATP 419


>AL050341-5|CAI20432.1|  225|Homo sapiens collagen type IX alpha 2
          protein.
          Length = 225

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 3  GSPGAAGIRHEGPLSNNPPATRGDHGI 83
          G PGAAG R   P    PP   G  G+
Sbjct: 5  GPPGAAGARRGPPGERGPPGPPGPPGV 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,006
Number of Sequences: 237096
Number of extensions: 233226
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 76,859,062
effective HSP length: 14
effective length of database: 73,539,718
effective search space used: 1397254642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)