Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B14
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    26   3.1  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    25   5.4  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    25   5.4  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     25   5.4  

>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHGIS 86
           G+PGA G    GP S  PP  +G  G++
Sbjct: 249 GAPGAPGQVVAGPGSVGPPGPQGPPGLA 276


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHG 80
           G+PG  G   EG L   PP   G  G
Sbjct: 206 GAPGDKGPTPEGDLKEGPPGDEGPPG 231


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHG 80
           G+PG  G   EG L   PP   G  G
Sbjct: 243 GAPGDKGPTPEGDLKEGPPGDEGPPG 268


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   GSPGAAGIRHEGPLSNNPPATRGDHG 80
           G+PG  G   EG L   PP   G  G
Sbjct: 227 GAPGDKGPTPEGDLKEGPPGDEGPPG 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,938
Number of Sequences: 27780
Number of extensions: 28919
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)