Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B13
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    28   0.84 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   1.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   5.9  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   5.9  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   7.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   7.8  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 338 GASCEPRRSTPDFFTSV 388
           G  C PR +TPDF T++
Sbjct: 405 GFDCHPRETTPDFLTAI 421


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 276 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 175
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 133  HGATLTKTHIPGFGDKMTAAGKV 201
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 207
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 405 PQRVVITDVKKSGVERRGSQDAPXFLSLEHVV 310
           P  +  T + + G+ERRG  D     S E VV
Sbjct: 622 PHILCNTSISELGLERRGKPDPDFLTSAEFVV 653


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 264 WQVFSGECFGTEIVVV 217
           W VFSG  +GT I+ +
Sbjct: 87  WAVFSGNMYGTSIMAI 102


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 166 GFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPN 285
           GF D +T  GK  L     +     A    +LP+ P + N
Sbjct: 396 GFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPSSPTIKN 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,945
Number of Sequences: 5004
Number of extensions: 43513
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)