Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B10
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.26 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   1.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.7  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    26   5.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.7  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   5.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.5  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    25   9.9  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 101 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 208
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 575 CQH-RNCIQCRPSLCCCESFA 516
           C+H R+CI+  PSL CC  F+
Sbjct: 163 CKHWRDCIKKEPSLFCCLDFS 183


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 134 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDNP 274
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +2

Query: 161  FFSQPSNGP----SGNYEPISTGPAFVDF 235
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 548 DIGYNFCVGSDGLAYEGRGWKVV 616
           + GY F + S  LAY+GRG  VV
Sbjct: 136 EFGYPFVLKSKTLAYDGRGNYVV 158


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 191 GNYEPI--STGPAFVDFNHPNYPPKRYDNPLAR 283
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 571 WQRWTGIRRSRLEGCWYTCWERPQPERRY 657
           W++   I RS+ E   +T W+  + +RR+
Sbjct: 566 WEKRARISRSKEEARQFTIWKTEETQRRF 594


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 167 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 256
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 527 ESFAYSACPECIGRWYNRPSCR 462
           + + + A  ECIGRW+ +   R
Sbjct: 54  DMYGFGANEECIGRWFKQTGRR 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,488
Number of Sequences: 5004
Number of extensions: 59174
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)