Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B10
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0305 - 14125193-14125421,14125666-14127104                       31   1.1  
12_02_0216 + 15804110-15804284,15804341-15804351                       30   1.9  
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864...    30   1.9  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    30   1.9  
09_03_0156 - 12844549-12845138,12845237-12845723                       28   5.9  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   5.9  
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926...    28   5.9  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   5.9  
01_06_0146 + 26969011-26969995,26970878-26970930                       28   7.8  

>04_03_0305 - 14125193-14125421,14125666-14127104
          Length = 555

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 652 DALAVGVPSMYTNNLPASTFVCQSIA--ANTEIVSNVAPVYAAVKVLHTLHVLNALVGGI 479
           DA   GVP      +P +  V +  A     EIV+ VA   A+ K +  LH+++A+   +
Sbjct: 475 DAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSV 534

Query: 478 TG 473
           +G
Sbjct: 535 SG 536


>12_02_0216 + 15804110-15804284,15804341-15804351
          Length = 61

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 226
           SG P+    +H V      FF+  SN  SGNY   + G  F
Sbjct: 12  SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52


>06_03_0795 -
           24683023-24683155,24685853-24686057,24686275-24686443,
           24686590-24686775,24686916-24687124,24687197-24687362
          Length = 355

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 131 HYCRPMEHHYCPPRELCLRQPW 66
           HYCR +E+ YC  + L  R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = -2

Query: 560 CIQCRP---SLCCCESFAYSACPECIGRWYN 477
           C QCR    ++CC        C  CI RWY+
Sbjct: 151 CHQCRRVANTICCTSCDRRGYCTNCISRWYS 181


>09_03_0156 - 12844549-12845138,12845237-12845723
          Length = 358

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 465 ARGPVIPPTNAFRTCRVCKTFTAA*TGATLDTISVL 572
           A+G V+PP +   TC  C  F    T AT+++++++
Sbjct: 148 AQGAVVPPKSQTSTCSSCWAFV---TAATIESLNMI 180


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 155 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 265
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0534 -
           9267297-9267734,9268376-9268649,9268782-9268889,
           9269476-9269567,9269652-9269711,9269812-9269994
          Length = 384

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 584 VHRCQHRNCIQCRPSLCCCESFAYSACPECIGRWYNRPSCR 462
           V  C H+ C  C  +LCC    + +A   C       P CR
Sbjct: 262 VRECGHQMCAACTLALCCHAKPSAAAATPCQQPLPTCPFCR 302


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 290 SHHGREGCRIAWVDNWDD*NRR 225
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>01_06_0146 + 26969011-26969995,26970878-26970930
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 636 AFPACIPTTFQPRPSYASPSLPTQKLYPMSPQFML 532
           A P   P   QP P    PSLP     P SP+ ML
Sbjct: 101 AAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESML 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,054,267
Number of Sequences: 37544
Number of extensions: 414735
Number of successful extensions: 1338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)