Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B10
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 4.0
AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical ... 29 4.0
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 5.3
U42847-4|AAF23186.1| 1073|Caenorhabditis elegans Immunoglobulin-... 28 5.3
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 28 6.9
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 28 6.9
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 28 6.9
Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 27 9.2
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 27 9.2
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 27 9.2
AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical... 27 9.2
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 672 SPIKQIPTLWLWAFPA-CIPTTFQPRPSYASPSLPTQKLYPMSPQF 538
SP Q P ++P+ P+ P PSY SPS P+ YP P +
Sbjct: 354 SPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPS-YPAEPAY 398
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 618 PTTFQPRPSYASPSLPTQKLYPMSP 544
P+ P PSY SPS P + Y + P
Sbjct: 378 PSPSYPSPSYPSPSYPAEPAYSVPP 402
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +2
Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 256
V A P P F+ P+ P PI GPAF P P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 575 CQHRNCIQCRPSLCCCESFAYSACPEC 495
C+ R C CRP CCC C C
Sbjct: 69 CRPRCCCCCRPK-CCCTCCRTCCCTRC 94
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 575 CQHRNCIQCRPSLCCCESFAYSACPEC 495
C+ R C CRP CCC C C
Sbjct: 71 CRPRCCCCCRPK-CCCTCCRTCCCTRC 96
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -2
Query: 575 CQHRNCIQCRPSLCCCESFAYSACPEC 495
C+ R C CRP CCC C C
Sbjct: 74 CRPRCCCCCRPK-CCCTCCRTCCCTRC 99
>AC024790-3|AAF60637.1| 446|Caenorhabditis elegans Hypothetical
protein Y47D7A.6 protein.
Length = 446
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -1
Query: 618 PTT--FQPRPSYASPSLPTQKLYPMSPQF 538
PTT ++ PSY PS K YP++P +
Sbjct: 276 PTTASYETTPSYPEPSYQVSKKYPIAPTY 304
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 140 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 256
V A P P F+ P+ P P+ GPAF P P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161
>U42847-4|AAF23186.1| 1073|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
1 protein.
Length = 1073
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +2
Query: 476 CYTTDQCIQDMQSMQNFHSSINWGDIGYNFCV---GSDGLAYEGRGWKVVGI 622
C D C Q + S + W D G CV GSD + W +V +
Sbjct: 574 CLPEDFCTQTVASTLTLAGPLKWSDKGNFTCVADNGSDKTDKDSSSWTIVRV 625
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 630 PACIPTTFQPRPSYASPSLPTQKLYPMSPQ 541
P I T P PS +SP L + ++Y +SP+
Sbjct: 2751 PLRIETEHAPAPSTSSPPLESTRIYYLSPK 2780
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 630 PACIPTTFQPRPSYASPSLPTQKLYPMSPQ 541
P I T P PS +SP L + ++Y +SP+
Sbjct: 2751 PLRIETEHAPAPSTSSPPLESTRIYYLSPK 2780
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 623 VYQQPSSLDLRMPVH-RCQ--HRNCIQCRPSLCCC 528
V++ P L+ +P + +C H C CRP L CC
Sbjct: 87 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCC 121
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 623 VYQQPSSLDLRMPVH-RCQ--HRNCIQCRPSLCCC 528
V++ P L+ +P + +C H C CRP L CC
Sbjct: 153 VFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCC 187
>Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical
protein F13G11.1b protein.
Length = 470
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 672 SPIKQIPTLWLWAFPACI-PTTFQPRPSYASPSLPTQKLYPMSP 544
S + QIP P+ I PT+F PS +SP LP Q SP
Sbjct: 287 STLAQIPMSTPVCMPSMITPTSFLDIPSTSSPMLPFQISTTTSP 330
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 672 SPIKQIPTLWLWAFPACI-PTTFQPRPSYASPSLPTQKLYPMSP 544
S + QIP P+ I PT+F PS +SP LP Q SP
Sbjct: 327 STLAQIPMSTPVCMPSMITPTSFLDIPSTSSPMLPFQISTTTSP 370
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2
Query: 560 CIQCRPSLCCCESFAYSACPEC 495
C CRP CCC + C C
Sbjct: 85 CCCCRPKCCCCCRRCCTCCRTC 106
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 488 DQCIQDMQSMQNFHSSINWGDIGYNFCVGSDG 583
+ C + ++ +N+++ W D Y +G DG
Sbjct: 1391 EDCFEPEETSRNYYAGPLWSDFDYTPVIGEDG 1422
>AL132862-31|CAB70234.1| 485|Caenorhabditis elegans Hypothetical
protein Y73F8A.34a protein.
Length = 485
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = -2
Query: 551 CRPSLCCCESFAYSACPECIGRWYNRPSCRIRHEEKRK 438
C C S Y C C+G W N C E+ K
Sbjct: 292 CNHMSCKSSSCRYEFCWLCLGDWKNHAQCNRYVEDDNK 329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,148
Number of Sequences: 27780
Number of extensions: 352315
Number of successful extensions: 1222
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -