Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B08
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 160 1e-40
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 56 2e-09
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 42 5e-05
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 30 0.22
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.51
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 1.6
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 3.6
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 3.6
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 160 bits (388), Expect = 1e-40
Identities = 77/124 (62%), Positives = 94/124 (75%)
Frame = +1
Query: 124 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 303
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 304 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 483
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 484 MMVE 495
MMVE
Sbjct: 134 MMVE 137
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 56.4 bits (130), Expect = 2e-09
Identities = 32/105 (30%), Positives = 51/105 (48%)
Frame = +1
Query: 181 EKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVHPEGKFV 360
E L+ L+ +L K G +GEV+K +D ++ +VK ++V
Sbjct: 20 EWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYV 79
Query: 361 VDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 495
V NVD + + RV+L + T+ +ILP +VDPLV M +E
Sbjct: 80 VGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIE 124
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 41.9 bits (94), Expect = 5e-05
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 313 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 492
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 493 E 495
E
Sbjct: 171 E 171
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 29.9 bits (64), Expect = 0.22
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +1
Query: 289 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 468
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 469 PLVSLM 486
+S++
Sbjct: 118 SSISML 123
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 395 TSFISTFLSRSTTNLPSGCTFTSTFFLSIGLTT 297
TS IS+ S S T++PS + S+FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.6
Identities = 23/115 (20%), Positives = 52/115 (45%)
Frame = +1
Query: 151 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 330
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 331 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVE 495
PE + V + VD + + C V L +++ ++ +L + DP++++M ++
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLD 183
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 157 EELQLIVAEKSQNLRRLQAQ 216
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 79 ANMTVTKMEVDSTKGEGFRPYYITKIEELQLIVAEKS 189
A +TV E+ S+KG F P ++ + + L+ +E++
Sbjct: 361 AKITVGGKEISSSKGYFFEPTVLSGVTQDMLVASEET 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,476
Number of Sequences: 5004
Number of extensions: 37070
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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