Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B08
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 166 1e-41
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 130 6e-31
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 53 1e-07
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 52 3e-07
06_01_0646 + 4678422-4678508,4679042-4679123,4679236-4679327,467... 44 9e-05
02_05_0986 - 33334205-33334362,33334487-33334662,33334774-333349... 44 9e-05
04_03_0811 - 19909128-19912214 30 1.2
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 28 3.6
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 4.7
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 28 4.7
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 4.7
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 27 6.3
02_01_0642 - 4803464-4805665,4806231-4806320 27 8.3
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 166 bits (403), Expect = 1e-41
Identities = 79/125 (63%), Positives = 97/125 (77%)
Frame = +1
Query: 121 GEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEV 300
GEG R YY+ I +LQL + +K+ NL RL+AQRN+LN++VRMLR GSYVGEV
Sbjct: 34 GEGLRQYYLQHIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEV 93
Query: 301 VKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVS 480
VK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH ILP+KVDPLV+
Sbjct: 94 VKVMGKSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVN 153
Query: 481 LMMVE 495
LM VE
Sbjct: 154 LMKVE 158
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 130 bits (314), Expect = 6e-31
Identities = 74/149 (49%), Positives = 95/149 (63%), Gaps = 23/149 (15%)
Frame = +1
Query: 118 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 297
+G+G RPYY ++I +LQL + + + NL RL+AQRN LN++V L GSYVGE
Sbjct: 32 RGDGLRPYYQSRIHDLQLQIRQGTDNLSRLEAQRNVLNSQVITLGEELKVLHEPGSYVGE 91
Query: 298 VVKPMDKKKVLVK-----------------------VHPEGKFVVDLDKNVDINDVTANC 408
VVK M K KVLVK VHPEGK+VVD+DK++DI ++ +
Sbjct: 92 VVKVMGKSKVLVKCCVLVFVHMSVALEIIGEDNILLVHPEGKYVVDVDKSIDITKLSPST 151
Query: 409 RVALRNESYTLHKILPNKVDPLVSLMMVE 495
RVALRN+SY LH ILP+KVDPLV+LM VE
Sbjct: 152 RVALRNDSYMLHLILPSKVDPLVNLMKVE 180
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 52.8 bits (121), Expect = 1e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +1
Query: 280 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 459
G +GEV++P+D ++ +VK ++VV VD +T+ RV L + T+ + LP
Sbjct: 61 GQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPR 120
Query: 460 KVDPLVSLMMVE 495
+VDP+V M+ E
Sbjct: 121 EVDPVVYNMLHE 132
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 280 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 459
G +GEV++P+D ++ +VK ++VV VD + A RV L + T+ + LP
Sbjct: 62 GQIIGEVLRPLDSERFIVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPR 121
Query: 460 KVDPLVSLMMVE 495
+VDP+V M+ E
Sbjct: 122 EVDPVVYNMLHE 133
>06_01_0646 +
4678422-4678508,4679042-4679123,4679236-4679327,
4679441-4679518,4679635-4679696,4680272-4680993,
4681115-4681272
Length = 426
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 295 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 471
+++ P D K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 472 LVSLMMVE 495
V++M VE
Sbjct: 153 SVTMMTVE 160
>02_05_0986 -
33334205-33334362,33334487-33334662,33334774-33334955,
33335064-33335282,33335407-33335551,33336127-33336188,
33336282-33336359,33336517-33336608,33337086-33337167,
33337519-33337605
Length = 426
Score = 43.6 bits (98), Expect = 9e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 295 EVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDP 471
+++ P D K ++ V KFVV L V D+ RV + Y + LP K+DP
Sbjct: 93 KIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDP 152
Query: 472 LVSLMMVE 495
V++M VE
Sbjct: 153 SVTMMTVE 160
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 481 VTPKDLLCLVRFCEVYSFHCEARLDSLQ*RHLYQRFCPDLRQIYLRGALLPA 326
V L L+ F + ++ + DSL +HL+ +CP L +I R + LP+
Sbjct: 847 VRVSQLQSLIHFYKPLEYNDTSNFDSL--KHLHLEYCPRLERIVPRESALPS 896
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 170 LSWLKSLKIFVVYKLNVMN*TLKYVCCVKNSSFYRNRVHMW 292
L +L SLK+ + L V L V N+ F+RN V++W
Sbjct: 537 LPFLNSLKMKMSILLGVAQMNLGIVISYFNAKFFRNSVNVW 577
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 154 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 243
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 309 LEEVQKLTVENLQLKGELQSQREELNSQKR 338
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 154 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 243
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 495 LEEVQKLTVENLQLKGELQSQREELNSQKR 524
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 154 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 243
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 366 LEEVQKLTVENLQLKGELQSQREELNSQKR 395
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 373 CPDLRQIYLRGALLPAPSFCP*V*QLH 293
C +L + LRG LLPAP+ P QLH
Sbjct: 57 CANLLSVNLRGLLLPAPAPAP-ANQLH 82
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 148 TKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 252
+K+E +Q+ V EK L Q + E+N++V L+
Sbjct: 474 SKVESIQIAVQEKDSELSETQRRLAEVNSEVVELK 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,252
Number of Sequences: 37544
Number of extensions: 215708
Number of successful extensions: 448
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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