Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B07
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 27 1.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 2.1
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 2.8
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.7
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 26 4.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.9
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 6.5
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 25 8.6
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 8.6
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 8.6
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 525 ILLMALQQVSLVWHAAGM*EWWITTYGTGVFRGKVWFGCLALHC 394
I L + +Q ++W + E W+ GV WF CL L C
Sbjct: 329 IYLTSSRQAFVLWVYSLDKELWLQLDMLGVLNHGSWFKCLVLDC 372
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 332 FSGESVENEVPSYDFPFVSRSQWSARQPN 418
FS + ++VP ++F F+SR+ W+A N
Sbjct: 1006 FSINDILSQVPVFEFIFLSRNFWTASLGN 1034
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 314 KAYPSIFSGESVENEVPSYDFP-FVSRSQWSARQPNQTL 427
+ Y SG+SVE E P FP +R+ W + +Q+L
Sbjct: 38 QVYRCPISGKSVEYECPESGFPTHCNRTHWEQDKIHQSL 76
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 276 NILNIITFNTIHKTRLLQYFLN 211
N+L++ TFN + K RL QY L+
Sbjct: 102 NVLSLNTFNILGKKRLSQYTLD 123
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/43 (18%), Positives = 22/43 (51%)
Frame = -2
Query: 146 FLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSKTVVRDLI 18
++ D + H ++ ++ Y + ++YH + + V+ DL+
Sbjct: 293 WMADYHHPTHNYLMDRSRYPDFNARKLVYHAYVEQSAVINDLL 335
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 77 VVYMIYHGFGDSKTVVRDLILYSVL 3
++ + HGF DSK LIL SVL
Sbjct: 297 ILSSLAHGFADSKVDASSLILSSVL 321
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 344 SVENEVPSYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKAMRS 523
S ++ D PF +Q + PN+ +P+ Y V HS A+ + E ++MRS
Sbjct: 320 SFQSSYNDADRPFQVGAQTQST-PNRISRSDSPIVYDVDTHSEDNASTASSEAISQSMRS 378
Query: 524 MQ 529
Q
Sbjct: 379 FQ 380
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 534 SIWTVINGGILDTILASAAMEQYT 605
+IWT+I +++TIL+ A EQ T
Sbjct: 343 NIWTIICEKLVETILSVAFTEQST 366
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 398 WSARQPNQTLPLKTPVPYVVIHHSYIPAACHTRETCCKA 514
W R+P L PVPY + SY + +TC A
Sbjct: 7 WKPREPKNALTCDPPVPY-DLQSSYQWQSILEHDTCYAA 44
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 414 GCLALHCERLTKGKSYDGTSFSTDSPEKIDGYAFTFIIIVTNNPIDNI-LNIITFNT 247
G LH +RLT ++ + ++SP + TF + P++++ I T NT
Sbjct: 743 GSQGLHYKRLTTDMIHNLFNVPSNSPVNMQAIYNTFSKMAVGEPMESLGTQIATLNT 799
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,605
Number of Sequences: 5004
Number of extensions: 57178
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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