Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B07
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 31 0.94
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.9
06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121 29 3.8
02_05_0979 + 33268294-33269595 29 3.8
03_06_0438 - 33917678-33918084,33929568-33930402,33931055-339313... 28 5.0
07_01_0142 + 1054495-1054644,1054767-1055971,1056102-1056180,105... 28 6.6
01_06_0300 + 28312590-28313939 28 6.6
09_04_0584 - 18714461-18716296 27 8.7
09_04_0440 - 17605405-17605476,17605558-17605629,17606014-176062... 27 8.7
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621... 27 8.7
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 27 8.7
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 30.7 bits (66), Expect = 0.94
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +2
Query: 449 YVVIHHSYIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFG 580
YV+ H++ + + + + +H+ GH +W +GY G
Sbjct: 445 YVLAHNATVDVVLQNANALARNVSEVHPWHLHGHDFWVLGYGDG 488
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 489 WHAAGM*EWWITTYGTGVFRG 427
WH G ++W+ YG G FRG
Sbjct: 473 WHLHGH-DFWVLGYGDGAFRG 492
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 365 SYDFPFVSRSQWSARQPNQTLPLKTPVPYVVIHHSYIP 478
S+D+ VS S + P +L L++P P++ + H P
Sbjct: 472 SFDYDGVSSSSSTPHVPTTSLALRSPAPHLRVRHMPAP 509
>06_01_0921 + 7104923-7105396,7106624-7106768,7107078-7107121
Length = 220
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 161 SKRILFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGD---SKTVVRDL 21
S+ I+F + + R V +RN SY H+ I G G+ SKT RDL
Sbjct: 170 SECIIFRVSVS-RYQVTVRNHQSYSGHFTEVKIVSGLGNAVGSKTSARDL 218
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 559 PPLMTVHMEVLHTPHGFTASLSSVACRWYV--RVVDNHIRY-WSFQRQGLVWLPRT 401
PP+ + M H PHG L+S +C V ++ +H Y W+ + ++ LP T
Sbjct: 102 PPVEEI-MTARHLPHGTIFPLASKSCHGLVLLKITGHHTHYLWNPSTRHILRLPGT 156
>03_06_0438 -
33917678-33918084,33929568-33930402,33931055-33931335,
33931358-33931451,33931549-33931857
Length = 641
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 470 YIPAACHTRETCCKAMRSMQNFHMDGHQWWDIGYHFGV 583
Y+P + ET S +F + WWD+G GV
Sbjct: 229 YLPCRMSSSETSSSTSSSGTHFRDEWSTWWDMGAIVGV 266
>07_01_0142 +
1054495-1054644,1054767-1055971,1056102-1056180,
1056619-1056822
Length = 545
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 524 MQNFHMDGHQWWDIGYHFG 580
+Q++H+DG+ +W +GY G
Sbjct: 438 LQSWHLDGYDFWVVGYGNG 456
>01_06_0300 + 28312590-28313939
Length = 449
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 155 RILFLLDLYIRAHVFIRNKCSYQN-HYVVYMIYHGFGDSKTVVRDL 21
R+ F+ +L+ + S+ + H++ Y++Y G +S T++ L
Sbjct: 109 RVTFVCELHAAEENLVVLSASFDHAHHIYYLVYDGIDESLTMIPSL 154
>09_04_0584 - 18714461-18716296
Length = 611
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 293 VTIIMNVKAYPSIFSGESVENEVPSYD--FPFVSRSQWSARQPN-QTLPLKTPVPYVVIH 463
V+I M +A P ES +N P FP S S ++ + QT+P K P+P ++
Sbjct: 470 VSICMRGQAVPY----ESSDNSRPKTGNIFPQDSDSGFNNMPSSYQTIPPKQPLPLSIME 525
Query: 464 HSYIPAACHT 493
H +P T
Sbjct: 526 HHVVPLGIRT 535
>09_04_0440 -
17605405-17605476,17605558-17605629,17606014-17606277,
17607106-17607510
Length = 270
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 406 EATKPDLASENSSTVCGYPPLLHTSGMPH*RDLL*SHEEYAELPYGRSSMVGYWI 570
E+ +++S N + CG P L T+ M L S Y L YG S++V WI
Sbjct: 163 ESISSNVSSINDALYCGSP--LQTTLMQ-----LDSENSYTALVYGTSALVTIWI 210
>04_01_0476 +
6215401-6217445,6217538-6217630,6218031-6218133,
6218237-6218254
Length = 752
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 113 FIRNKCSYQNHYVVYMIYHGFGDS 42
FIR + ++HYVV+ + H F +S
Sbjct: 522 FIRKVANIEDHYVVHDLLHDFAES 545
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = +2
Query: 521 SMQNFHMDGHQWWDIGYHFGVSSDGT 598
S+Q++H+DG+ ++ +G +G+ +D +
Sbjct: 454 SVQSYHLDGYAFFVVGMDYGLWTDNS 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,719
Number of Sequences: 37544
Number of extensions: 344325
Number of successful extensions: 867
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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