Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B07
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis ...    29   3.4  
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 152 FVSSVVDVKSVIESAAALLLFKKYCNNRVLCIVLKVIMFNILSIGL--FVTIIMNVKAYP 325
           FV SV+            ++   YC+   LCI L +  F +L  G+   V  I N K++ 
Sbjct: 235 FVQSVIQDYVCSMDVVNNMVSHFYCSGDRLCITLSLFSFGVLIYGIDGLVMYIFNYKSFG 294

Query: 326 SIFSGESVENE 358
           S  +     NE
Sbjct: 295 SSVASREPTNE 305


>Z83234-2|CAB70170.2|  715|Caenorhabditis elegans Hypothetical
           protein K09E4.4 protein.
          Length = 715

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 149 LFLLDLYIRAHVFIRNKCSYQNHYVVYMIYHGFGDSK 39
           L +LDLY       +   S+Q H+ V+ + H FG S+
Sbjct: 387 LLILDLYAEVVPAWQMTSSFQGHHFVWCLLHNFGGSR 423


>U40933-4|AAA81674.1|  778|Caenorhabditis elegans Caenorhabditis
           zeste white 10 (drosophila) homolog protein 1 protein.
          Length = 778

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 104 NKCSYQNHYVVYMIYHGFGDS-KTVVRDLILYSVL 3
           N C Y +H ++ M +   GD+ KT++  L+L SV+
Sbjct: 529 NNCHYISHCIMTMSFEASGDNQKTLLEPLLLDSVI 563


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 130 YKSNKNNIRFECR*CQKCYRVSSCP 204
           Y+S+KNN+ ++CR   +C++  + P
Sbjct: 20  YRSSKNNLIYKCRNINQCFQNYNSP 44


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 452 HTVLEFSEARSGLVASHSTANDSRKESHMTELHFPLI 342
           HT LE     +GLV+S++++  SR + H  + H+P I
Sbjct: 613 HTELEVLAFLNGLVSSYNSSVISRGQQHYVD-HYPRI 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,997
Number of Sequences: 27780
Number of extensions: 313929
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)