Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B06
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 1.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 3.7
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 25 3.7
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 3.7
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 6.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 6.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 24 8.5
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 8.5
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 24 8.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 24 8.5
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 122 YLSSRELNISSIHNSITELSRASKRWTTCIVKPQS 226
Y + ++ +S+HN+ +L A+KR C+++ S
Sbjct: 29 YRNKKQKKWASVHNNEAQLHSANKRNDNCLIQRSS 63
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/57 (19%), Positives = 26/57 (45%)
Frame = +2
Query: 65 VILQTESNWPITLTFNTTLYLSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQ 235
++ + + N ++T + L S ++ + N + L+ + +W I KP S+
Sbjct: 903 ILYEKQKNLQASIT-EVSKQLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSE 958
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 172 RVIQGIQALDNLHSKATINITAGGVGHTFVNL 267
+V IQ +DNL K I GG+ TF+ +
Sbjct: 213 KVADKIQLIDNLLDKVNRLIICGGMAFTFLKV 244
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 55 LVIGNTANRVKLANHTDVQYNAIPFIKRV 141
LV GN +RV + + T + N++PF K +
Sbjct: 818 LVFGNMEDRVIIHSVTRINENSVPFNKNL 846
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 216 SHNQYHSGRRRSHIRQSSNEKREGERPR 299
S N+ HS +R H R+S R R R
Sbjct: 188 SDNEQHSSDKREHSRRSYRNDRNNWRER 215
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 6.4
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 92 PITLTFNTTLYLSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQREASVTHSSI 265
PIT ++++ SS + SSI NS T ++ +S ++ + SI +T SSI
Sbjct: 3083 PIT---SSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSI 3137
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 122 YLSSRELNISSIHNSITELSRASKRWTTCIV 214
Y+SSR + + + ELSR + +T +V
Sbjct: 1000 YMSSRNEEVMEVSEKLLELSRFDQIYTLIVV 1030
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 83 SNWPITLTFNTTLYLSSRELNISSIHNSITELSRAS 190
S +P + TT +LSS ++ SS H+S + S S
Sbjct: 608 STYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSSMS 643
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 24.2 bits (50), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 125 LSSRELNISSIHNSITELSRASKR 196
+S NISS+HN ++ LS S++
Sbjct: 38 ISVSAFNISSMHNELSGLSEKSRQ 61
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 125 LSSRELNISSIHNSITELSRASKRWTTCIVKPQSISQREASVTHSSI 265
LS RE++ ++ + + ELS + +V S+ QR S H +
Sbjct: 441 LSPREISNDNLDDHLIELSEPGEIVDNHLVNDTSMHQRRTSGRHDLV 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,003
Number of Sequences: 5004
Number of extensions: 29365
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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