Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B06
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0347 + 2514831-2515068,2515126-2515304,2515514-2515747,251...    28   2.7  
12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239...    28   3.6  
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450...    27   8.2  
05_01_0071 + 482765-482825,483562-483776,484115-484693                 27   8.2  
03_03_0086 + 14345649-14347190                                         27   8.2  

>06_01_0347 +
           2514831-2515068,2515126-2515304,2515514-2515747,
           2515882-2516137,2516300-2516496
          Length = 367

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 40  AEGSHLVIG-NTANRVK-LANHTDVQYNAIPFIKRVKYFFYSQLDNRVIQGIQALDNLHS 213
           A G +L+IG N A+      +HT + Y+AIP  ++++YF   Q     + G     ++ +
Sbjct: 113 ASGKNLLIGANFASAGSGYYDHTALLYHAIPLSQQLEYFKEYQSKLAAVAGSSQAQSIIN 172

Query: 214 KATINITAG 240
            +   I+AG
Sbjct: 173 GSLYIISAG 181


>12_01_0313 +
           2388488-2388560,2389285-2389462,2390221-2390331,
           2391280-2391362,2391826-2392027,2392078-2392101,
           2392234-2392408,2392482-2392683,2393897-2394036
          Length = 395

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 133 KRVKYFFYSQLDNRVIQGIQALDNLHSKATINITAGGVGHTFVNLR---MKSERGRGLDY 303
           K V Y  Y+ L NR+ +G+Q   N   + +   T GG+   FV  R   ++ +    +DY
Sbjct: 228 KAVGYHEYADLINRINKGVQLYSNSMQELSQKGT-GGLSEAFVAFRNYFVEKDVFEEIDY 286

Query: 304 DIG 312
             G
Sbjct: 287 KFG 289


>07_03_1217 -
           24943466-24943828,24944207-24944374,24944941-24945009,
           24945091-24945197,24945846-24945980,24946090-24946195,
           24946758-24946794,24949795-24949832
          Length = 340

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +3

Query: 180 PGHPSAGQPA**SHNQYHSGRRRSHIR---QSSNEKREGERPRL---*HRH 314
           P  P+A +P   +  QYH+  RR  IR   ++ N+  +G +P L    HRH
Sbjct: 180 PVEPAAEEPIFVNAKQYHAILRRRQIRAKLEAQNKLVKGRKPYLHESRHRH 230


>05_01_0071 + 482765-482825,483562-483776,484115-484693
          Length = 284

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -3

Query: 291 SPPLAFHSKIDECVTDASRCDIDCGFTMQVVQRLDALDNSVIEL*IEEIFNSLDERYSVV 112
           S P  FH KI  C TD S   +   +   V       D+ V++L    +  S +E   + 
Sbjct: 178 SGPKVFHGKISACTTDVSNYIV--LYDSNVCGATSVGDDRVMQLLRRVVAVSANEILILN 235

Query: 111 LNVSVIGQFDSVCSIT 64
           ++   I Q D+V S T
Sbjct: 236 IHAHNIHQNDNVSSRT 251


>03_03_0086 + 14345649-14347190
          Length = 513

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 153 EEIFNSLDERYSVVLNVSVIG 91
           EEIFN++DE+  VV N  V G
Sbjct: 213 EEIFNTMDEKDVVVYNAMVEG 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,639,137
Number of Sequences: 37544
Number of extensions: 186259
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)