Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B06
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerat...    26   9.7  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    26   9.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    26   9.7  

>Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical
           protein C44H4.2 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 195 RLDALDNSVIEL*IEEIFNSLDERYSVVLNVSVI 94
           RLD  +NS++E+  +EIF +L++ Y + L  + I
Sbjct: 103 RLDLSNNSIVEIQEQEIFPNLNKLYDINLGSNKI 136


>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +2

Query: 110 NTTLYLSSRELNISSIHNSI--TELSRA---SKRWTTCIVKPQSISQREASVTHS 259
           NTT Y+ SRE N+ + HN +  T LS +   S+R    + K   +   +A+V +S
Sbjct: 36  NTTAYVKSREANLRNPHNYLKKTNLSNSDLRSRRHFLTLFKLLEMDSLKAAVDYS 90


>U88169-9|AAB42230.1|  417|Caenorhabditis elegans Phosphoglycerate
           kinase protein 1 protein.
          Length = 417

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 172 RVIQGIQALDNLHSKATINITAGGVGHTFVNLRMKSERGRGLDYD 306
           +V   IQ + NL  K    I  GG+ +TF+ +    + G  L YD
Sbjct: 215 KVADKIQLIKNLLDKVNEMIIGGGMAYTFLKVAQGVKIGNSL-YD 258


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 275  FIRRLTNV*PTPPAVILIVALLCRLSSAWMPWITLLSSCE 156
            FIR+ T +   P     ++    +LS  W PW++ + + E
Sbjct: 2459 FIRQATTISLPPNQQACLIDYEVQLSGDWQPWLSKVPTME 2498


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 275  FIRRLTNV*PTPPAVILIVALLCRLSSAWMPWITLLSSCE 156
            FIR+ T +   P     ++    +LS  W PW++ + + E
Sbjct: 2459 FIRQATTISLPPNQQACLIDYEVQLSGDWQPWLSKVPTME 2498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,641
Number of Sequences: 27780
Number of extensions: 164950
Number of successful extensions: 453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)