Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_B05
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    25   5.6  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.8  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   9.8  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 240 PRYNLHCLKTCRSPHDYLHRRQLCTEALAS 151
           P++N HCLK C      L +   C  A  S
Sbjct: 711 PKFNRHCLKICERRLPLLQQSFFCLAATVS 740


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
 Frame = +3

Query: 387 ETIDFSDTKKAA-------DIINQWANEKTRGHIRSPISDDTIDP 500
           + IDFS+T+  A       DI  Q A +  R H RS +    ++P
Sbjct: 220 DLIDFSETRPLAQASRATPDIKEQHAKKPKRKHTRSTVPTSNVEP 264


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 548 PVTLEEYNIEERGSCIRIYGVIRD--WRSNMSSGLLISPLINDVSCF 414
           P T +   +  + S  ++  ++ +  W++NM+   L++P+  DV  F
Sbjct: 210 PETEDFLRLRTKASLSKLQALLPEVAWKNNMNQWELLNPVYKDVRVF 256


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 96  FLKKLQRSFVNGIA*GCPVVLV 31
           +LKK+ RSF NG   G P   V
Sbjct: 66  YLKKVHRSFKNGFRSGKPAAAV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,143
Number of Sequences: 5004
Number of extensions: 46468
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)