Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_B01
(355 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0981 + 9931542-9931606,9931779-9933105 31 0.34
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 2.4
05_04_0202 - 19010953-19013355 27 4.2
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 26 7.4
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453... 26 7.4
06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395 26 7.4
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891... 26 7.4
02_01_0035 - 220036-221419,222050-222801 21 9.3
10_08_0970 + 21944930-21945061,21945532-21945650,21945758-219458... 26 9.8
08_01_0468 - 4120724-4120834,4121765-4121894,4122010-4122151,412... 26 9.8
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 26 9.8
01_06_0469 - 29585972-29586604 26 9.8
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 30.7 bits (66), Expect = 0.34
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 49 YGMGYNQMPFHPEHHHNRLRSPY 117
Y Y+Q PFHP HHH P+
Sbjct: 148 YNPYYHQEPFHPPHHHQYNPEPH 170
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 171 ATRVGQHARRLLQKVPDARVIVSRH--RRQRIQGDYTFNLL**EGHRCQSPDRSSDGAS 341
AT G AR Q+ P+A RH +R R+ GD+ N G C DGA+
Sbjct: 101 ATSAG--ARETRQRRPEAEQWRQRHCCQRGRVSGDFPTNRRRRRGRGCTCEAEGEDGAA 157
>05_04_0202 - 19010953-19013355
Length = 800
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 74 LSIRNTITIG*EAHTSARTS-SIPVGSGPNSPA 169
LS T G E T +TS +PVG GP SPA
Sbjct: 119 LSFLLTDASGAEIRTHRKTSFRVPVGVGPGSPA 151
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 151 WSELSSELRELDNMLADFYRKF 216
W+ LSSEL +L ++ +F RK+
Sbjct: 451 WASLSSELMQLFGLIWNFVRKY 472
>12_01_0560 -
4532398-4532724,4532975-4533235,4533670-4533855,
4533922-4533936,4533941-4534246,4535032-4535135,
4535669-4535801
Length = 443
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 FVLCL-AAAVSAAPYYGMGYNQMPFHPEHHHNRLRSPY 117
F+L L AA +A+PY+ +GYN + +H ++ Y
Sbjct: 214 FLLALHMAAEAASPYFRLGYNSLGAFATINHLHFQAYY 251
>06_03_1109 - 27672176-27672223,27672371-27672452,27674169-27674395
Length = 118
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 16 CLAAAVSAAPYYGMGYNQMPFHPEHHHNRLRS 111
CL++AV AA G GY F + RLR+
Sbjct: 20 CLSSAVDAAAAAGNGYRTTAFLVDDEGRRLRA 51
>01_01_1124 +
8916863-8917090,8917745-8917936,8918115-8918280,
8918373-8918794
Length = 335
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 13 LCLAAAVSAAPYYGMGYNQMPFHPEH 90
L LA +V P+YG GY P +H
Sbjct: 13 LLLATSVHGNPWYGYGYGLFPQFYDH 38
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 21.0 bits (42), Expect(3) = 9.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Frame = +1
Query: 46 YYGMGYNQMPFHPEHHH 96
Y + ++ +P H HHH
Sbjct: 55 YQPLHHHALPQHHHHHH 71
Score = 20.6 bits (41), Expect(3) = 9.3
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 76 FHPEHHHNR 102
FH +HHH +
Sbjct: 111 FHEQHHHQK 119
Score = 20.6 bits (41), Expect(3) = 9.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 82 PEHHHNRLRSPYFGEDV 132
P+HHH+ + G DV
Sbjct: 132 PQHHHHHHPHHHLGLDV 148
>10_08_0970 +
21944930-21945061,21945532-21945650,21945758-21945818,
21946241-21946288,21946610-21946726,21947434-21949044
Length = 695
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 3 SICSLSCCGRVGGTVLRYGVQPN 71
++C+L C ++ G +LR G PN
Sbjct: 505 AVCALKCGQQIHGRLLRTGFYPN 527
>08_01_0468 -
4120724-4120834,4121765-4121894,4122010-4122151,
4122177-4122411
Length = 205
Score = 25.8 bits (54), Expect = 9.8
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -2
Query: 219 RELSVEVGEHVVQLA*LAGEFGPEPTGIEDVLAEVWASQPIVMVFRMERHLVVPHTVVRC 40
+ LS E+ E V + + GE PE D E+WA + M+ L VPH + R
Sbjct: 33 QSLSREL-EDVHAVLRMVGEVPPEQL---DGTVELWAHDLREASYDMDLPLAVPHMLRRL 88
Query: 39 RRHGRSKTE 13
R+ R E
Sbjct: 89 RKKVRKLFE 97
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 25.8 bits (54), Expect = 9.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 124 EDVFDTGRFWSELSSELREL-DNMLAD---FYRKFPTPASSSQGIEGNEYKVTIPLTSFD 291
E +FD + +L +L + L D F R+FP + Q +EG+ VT+ +T
Sbjct: 1990 ETIFDLAEMSTHEMQDLLQLPSSQLQDIVGFLRRFPNIDMAFQVLEGDGGSVTVQVTLER 2049
Query: 292 EKDIVVKARTG 324
E ++++ G
Sbjct: 2050 EMADLLQSEAG 2060
>01_06_0469 - 29585972-29586604
Length = 210
Score = 25.8 bits (54), Expect = 9.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 132 DVLAEVWASQPIVMVFRMERHLVVPHTVVRCRRHGRS 22
D +A A+QP+ + M H RC RHG +
Sbjct: 65 DAVAAAAAAQPLSTIVNMTLHASNRRAPGRCYRHGEA 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,417,735
Number of Sequences: 37544
Number of extensions: 198905
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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