Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A21
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.35 
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.62 
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.4  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    26   3.3  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   4.4  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    25   7.6  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   7.6  

>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 365 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 252
           CI GF ++  + +RTR + PS    +LS T V+   FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 365 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 252
           CI GF ++  + +RTR + PS    +LS + V+   FL
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS-AFQTLSLSSVMVTSFL 361


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 103 PIKDCTSVDLQCRHHLPLSR 44
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 447 DNVDQVYDAWDVKVNGAIYVWQ 382
           D VD++YDAW    N     WQ
Sbjct: 54  DYVDEMYDAWKKDPNSVHASWQ 75


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 201
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 316 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 435
           AL+R    A++ K       S LP+++  I+   PSI N+
Sbjct: 2   ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 937

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 4/108 (3%)
 Frame = +1

Query: 142  LLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKTFGTTPVDDKESEHREGFTAL 321
            ++  E YG DGI+LS    +R     +    +    I KT  +   D         FT  
Sbjct: 831  IIAKEMYGADGIELSPLAKERLETFTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVP 890

Query: 322  VREMKQALN---VKPNMQLVISVLPNV-NSSIYFDVPSIINLVDIVNI 453
            +R+M+ +     + P +   IS +P +     Y+++  I    DIV +
Sbjct: 891  IRDMRLSAGAGFIYP-LAAAISTIPGLPTKPAYYNI-DIAENGDIVGL 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,383
Number of Sequences: 5004
Number of extensions: 33223
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)