Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A17
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0843 - 32374830-32374958,32375407-32375482,32375572-323756...    32   0.30 
04_03_0772 - 19438910-19439209,19439692-19439828,19441334-194415...    28   4.9  

>01_06_0843 -
           32374830-32374958,32375407-32375482,32375572-32375693,
           32375834-32375908,32376007-32376142,32376223-32376311,
           32377304-32377466,32379772-32379860,32379983-32380061,
           32380195-32380240,32380718-32380801,32380919-32380982,
           32381103-32381156,32381279-32381347,32381470-32381778
          Length = 527

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 306 KQIYNSNH--QAMEYFNYVSLNYTYILQWKLFIITSIQRSYLTALHITVSYFLNLFQD 139
           K +Y+  H   ++ Y  Y SL     L+W    ++++   ++T + + + +F NLF D
Sbjct: 318 KMVYDITHLISSLYYKGYGSLTKIQKLEWNNRGMSTVHAMFITLMSVYLVFFSNLFSD 375


>04_03_0772 -
           19438910-19439209,19439692-19439828,19441334-19441570,
           19441948-19442149,19442761-19442858,19443082-19443665,
           19443725-19443882
          Length = 571

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 317 FLRQCYTVSNSEVLYNYIYVSTIMHYFRCS 406
           FL  C+      ++Y Y+   T+  YF+CS
Sbjct: 320 FLGHCFRHDKMFLVYEYLSNGTLSRYFKCS 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,320
Number of Sequences: 37544
Number of extensions: 181135
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)