Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A13
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...   138   4e-34
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    27   2.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   3.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.0  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   8.8  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   8.8  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   8.8  

>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score =  138 bits (335), Expect = 4e-34
 Identities = 70/153 (45%), Positives = 102/153 (66%)
 Frame = +3

Query: 132 ATGDLTQLLNSIQTAVKAIQTAVRKAGIAKLHGISGDTNVQGEQVKKLDVLSNDLFINML 311
           A+G+L+ LLNS+Q + K I   +RKA +  L G+SG  N  G++ KKLD + ND+FI  +
Sbjct: 43  ASGELSLLLNSLQFSFKFIANTIRKAELVNLIGLSGIVNSTGDEQKKLDKICNDIFITAM 102

Query: 312 KSSFTACLLVSEENSSVIQVETEKRGKYVVCFDPLDGSSNIDCLVSVGSIFAIFRKKSHG 491
           KS+    L+VSEE   +I V++   G Y V  DP+DGSSNID  VSVG+IF I++ +   
Sbjct: 103 KSNGCCKLIVSEEEEDLIVVDSN--GSYAVTCDPIDGSSNIDAGVSVGTIFGIYKLRPGS 160

Query: 492 EPVESDALQPGNELVAAGYALYGSATMMVLSPG 590
           +   SD L+PG E+VAAGY +YG++  ++L+ G
Sbjct: 161 QGDISDVLRPGKEMVAAGYTMYGASAHLLLTTG 193


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 463 KIEPTDTRQSMFDEPSSGSKHTTYLPRFSV 374
           KI+  DTR   F++PS+ S+H     R S+
Sbjct: 4   KIQTVDTRLISFEKPSNDSEHPFEHTRVSI 33


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -3

Query: 538 ATSSLPGCNASDSTGSPCDFFLNIAKIEPTDTRQSMFDEPSSGSKHTTYLPRFSVSTCIT 359
           ++SS     +S S+ S      + +   PT T  ++    SS S  T+     S S+  +
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 358 DEFSSDTSKHAVNEDLS 308
             FSS  S  +++   S
Sbjct: 315 SSFSSTLSSSSMSSSSS 331


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 261 QVKKLDVLSNDLFINMLKSSFTACLLVSEENSSVIQ 368
           QV+   + +  ++ N   S+FT C L+++E++ +I+
Sbjct: 6   QVQLFQLYNYSVYSNGTISNFTNCYLINDEHTPIIE 41


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 74  RKCYDVDQMGPSATEDGTDGYRRSNPATEFDTNSCEGHTDCCEES 208
           R C D   MG  A+   T   R+    T F + SC  H+D C+ S
Sbjct: 404 RICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSC--HSDSCKVS 446


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 418 SSGSKHTTYLPRFSVSTCITDEFSSDTSKHAVNEDLSMLINKSLERTSSF 269
           SSG   T+ LP  SVST +++  +  +S  +    LS  +  S+  T +F
Sbjct: 715 SSGFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETF 764


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 337 SKHAVNEDLSMLINK--SLERTSSFLTCSPWT 248
           SKH  N DL  LI+K  ++  TS  L+ SP T
Sbjct: 769 SKHPSNHDLEELIHKYDAMTGTSDPLSASPRT 800


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 451 TDTRQSMFDEPSSGSKHTTYLPRFSVSTCITDEFSSDTSKHAVNEDLSMLINKSLER 281
           +D+  S   E  + +  TT     S  +  T+  SS+ S    +ED S + +KSL+R
Sbjct: 306 SDSDSSSSSEDGNSNTDTTTSGEVSAQSS-TNSTSSEESTSVKDEDSSKIHDKSLKR 361


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 358 DEFSSDTSKHAVNEDLSMLINKSLERTSSFLTCSP 254
           + FSS +S+  V+ D+S  + K ++R +  +   P
Sbjct: 223 ESFSSSSSESLVDRDISQPMKKKIKRQNRLVKLPP 257


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 583 ESTIMVADPYKAYPAATSSLPGCNASDSTGSPCDFFLNIAKIEPTDTRQSMFDEPSSGS 407
           E    ++ P  A+P   SS P    + S  SP   F  + K+EPT  ++  F   SS S
Sbjct: 247 ELNFQISQPSPAHPVDLSS-PETAPNISPVSP---FAQLVKLEPTSPQKPSFALDSSFS 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,815
Number of Sequences: 5004
Number of extensions: 56356
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)