Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_A13
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1458 + 37512954-37513112,37513217-37513324,37513357-375134... 175 2e-44
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881... 142 3e-34
05_04_0448 - 21349877-21349990,21350263-21350338,21350418-213505... 141 5e-34
06_03_1034 - 27044892-27044983,27045189-27045216,27045514-270459... 72 4e-13
04_02_0036 - 9033411-9033746,9033961-9034032,9034122-9034222,903... 54 7e-08
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 30 1.7
08_02_1112 - 24382294-24382854 29 2.2
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 28 6.8
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184... 27 9.0
>01_06_1458 +
37512954-37513112,37513217-37513324,37513357-37513431,
37513520-37513581,37513690-37513756,37514161-37514274,
37514357-37514443,37514571-37514641,37514718-37514783,
37514941-37515027,37515127-37515202,37515321-37515424,
37515550-37515583
Length = 369
Score = 175 bits (426), Expect = 2e-44
Identities = 97/203 (47%), Positives = 124/203 (61%), Gaps = 20/203 (9%)
Frame = +3
Query: 48 MSQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQTAVRKAGIAKLH 227
M + A+ + MT+TR+VL +Q P A GDLT LL+ I K + +AV KAG+AKL
Sbjct: 1 MDHEADAYRTDLMTITRYVLNEQSRNPEARGDLTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 228 GISGDTNVQ--------------------GEQVKKLDVLSNDLFINMLKSSFTACLLVSE 347
G++G+TNVQ GE+ KKLDVLSN++F+ L SS C+LVSE
Sbjct: 61 GLAGETNVQASVPGNNCHLSQFLVSEIEIGEEQKKLDVLSNEVFVKALVSSGRTCVLVSE 120
Query: 348 ENSSVIQVETEKRGKYVVCFDPLDGSSNIDCLVSVGSIFAIFRKKSHGEPVESDALQPGN 527
E+ V+ RGKY VCFDPLDGSSNIDC VS+G+IF I+ K D LQPG
Sbjct: 121 EDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIYMIKDKENVTLEDVLQPGK 180
Query: 528 ELVAAGYALYGSATMMVLSPG*G 596
+VAAGY +YGS+ +VLS G G
Sbjct: 181 NMVAAGYCMYGSSCTLVLSTGNG 203
>03_02_0486 -
8811539-8811610,8811725-8812231,8812327-8812551,
8812648-8813064
Length = 406
Score = 142 bits (343), Expect = 3e-34
Identities = 83/184 (45%), Positives = 111/184 (60%), Gaps = 14/184 (7%)
Frame = +3
Query: 87 TLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQTAVRKAGIAKLHGISGDTNVQGEQV 266
TLT W+L Q++ A T G++T +L SI TA K I + V++A I+ L G+ G NVQGE
Sbjct: 72 TLTTWLLKQEQ-AGTIDGEMTIVLASISTACKQIASLVQRAPISNLTGVQGAVNVQGEDQ 130
Query: 267 KKLDVLSNDLFINMLKSSFTACLLVSEENSSVIQVETEKRGKYVVCFDPLDGSSNIDCLV 446
KKLDV+SN++F N LKSS ++ SEE + VE G Y+V FDPLDGSSNID V
Sbjct: 131 KKLDVVSNEVFSNCLKSSGRTGVIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAV 190
Query: 447 SVGSIFAIFRKK----------SHGEPVESDAL----QPGNELVAAGYALYGSATMMVLS 584
S GSIF I+ + + VE + QPG+ L+AAGY +Y S+ + VL+
Sbjct: 191 STGSIFGIYSPNDECLADIADDQNLDQVEQRCIVSVCQPGSNLLAAGYCMYSSSVIFVLT 250
Query: 585 PG*G 596
G G
Sbjct: 251 IGTG 254
>05_04_0448 -
21349877-21349990,21350263-21350338,21350418-21350504,
21350706-21350771,21350855-21350925,21351030-21351116,
21351201-21351314,21351612-21351678,21351807-21351868,
21351960-21352085,21352091-21352381
Length = 386
Score = 141 bits (341), Expect = 5e-34
Identities = 70/130 (53%), Positives = 89/130 (68%)
Frame = +3
Query: 207 AGIAKLHGISGDTNVQGEQVKKLDVLSNDLFINMLKSSFTACLLVSEENSSVIQVETEKR 386
A I++ H + + VQGE+ KKLDVLSN++F+ L SS C+LVSEEN I V+ R
Sbjct: 101 ASISRCH--TYEVAVQGEEQKKLDVLSNEVFVKALVSSGRTCVLVSEENEEAIIVDAPLR 158
Query: 387 GKYVVCFDPLDGSSNIDCLVSVGSIFAIFRKKSHGEPVESDALQPGNELVAAGYALYGSA 566
GKY VCFDPLDGSSNIDC VS+G+IF I+ K D LQPG +++AAGY +YGS+
Sbjct: 159 GKYCVCFDPLDGSSNIDCGVSIGTIFGIYMIKDKDNVTLDDVLQPGTDMLAAGYCMYGSS 218
Query: 567 TMMVLSPG*G 596
+VLS G G
Sbjct: 219 CTLVLSTGNG 228
Score = 61.7 bits (143), Expect = 5e-10
Identities = 35/86 (40%), Positives = 48/86 (55%)
Frame = +3
Query: 48 MSQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQTAVRKAGIAKLH 227
M A + MT+TR VL +Q P + GD T LL+ I K + +AV KAG+AKL
Sbjct: 1 MDHAAEAQRTDLMTITRHVLNEQGRHPESRGDFTILLSHIVLGCKFVASAVNKAGLAKLI 60
Query: 228 GISGDTNVQGEQVKKLDVLSNDLFIN 305
G++GDTNVQ + S LF++
Sbjct: 61 GLAGDTNVQASNPISDPLYSTLLFLH 86
>06_03_1034 -
27044892-27044983,27045189-27045216,27045514-27045908,
27046224-27046312,27046352-27046620,27047037-27047270
Length = 368
Score = 71.7 bits (168), Expect = 4e-13
Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 10/149 (6%)
Frame = +3
Query: 132 ATGDLTQLLNSIQTAVKAIQTAVRKAGIAKL-HGISGD---TNVQGEQVKKLDVLSNDLF 299
A DL L+ +Q+A K I V G A+L G +G + K LD LSN++
Sbjct: 23 AADDLVVLVAHVQSACKRIAALVASPGNAELSRGKAGGGVAVAAGRDAPKPLDELSNEII 82
Query: 300 INMLKSSFTACLLVSEENSSVIQVETEKRGKYVVCFDPLDGSSNIDCLVSVGSIFAIFRK 479
++ L+ S ++ SEEN I V + YVV DPLDGS NI+ + G+IF I+ +
Sbjct: 83 LSSLRRSGKVAVMASEENHLPIWVSNDS--PYVVVTDPLDGSRNIEVSIPTGTIFGIYNR 140
Query: 480 KS------HGEPVESDALQPGNELVAAGY 548
+ E + ++LQ G LVA+G+
Sbjct: 141 LAELDHLPEEERAQLNSLQSGTHLVASGF 169
>04_02_0036 -
9033411-9033746,9033961-9034032,9034122-9034222,
9034309-9034530,9034832-9034913,9035029-9035214,
9035311-9035445,9035543-9035641
Length = 410
Score = 54.4 bits (125), Expect = 7e-08
Identities = 44/155 (28%), Positives = 71/155 (45%)
Frame = +3
Query: 120 TAPTATGDLTQLLNSIQTAVKAIQTAVRKAGIAKLHGISGDTNVQGEQVKKLDVLSNDLF 299
T T +L +LL + A++ I VR A G + N G++ +D+L++ L
Sbjct: 83 TKATPDKNLIRLLICMGEAMRTISFKVRTASC----GGTACVNSFGDEQLAVDMLADKLL 138
Query: 300 INMLKSSFTACLLVSEENSSVIQVETEKRGKYVVCFDPLDGSSNIDCLVSVGSIFAIFRK 479
L+ S SEE + + G + V FDPLDGSS +D +VG+IF ++
Sbjct: 139 FEALEYSHVCKYACSEEVPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVW-- 196
Query: 480 KSHGEPVESDALQPGNELVAAGYALYGSATMMVLS 584
P + G + VAA +YG T +++
Sbjct: 197 -----PGDKLTGVTGGDQVAAAMGIYGPRTTYIIA 226
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +3
Query: 252 QGEQVKKLDVLSNDLFINMLKSSFTACLLVSEENSSVIQVETEKRGKYVVCFDPLDGSSN 431
Q + V + D DL N L+ + + EE S+ + + DPLDG++N
Sbjct: 36 QVDLVTETDKACEDLIFNHLRKHYPDHKFIGEETSAALGATADLTDDPTWIVDPLDGTTN 95
>08_02_1112 - 24382294-24382854
Length = 186
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +3
Query: 27 VIYVFTKMSQQGPAFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQTAVRK 206
++ VF + + P+FD TL + AP GD+T N + + + R
Sbjct: 22 ILVVFLAVRPRAPSFDAAGATLNAVYVGSTSPAPYVNGDMTVAAN-VSNPNQKMDVVFRS 80
Query: 207 AGIAKLHG 230
A + G
Sbjct: 81 AAVELFFG 88
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 195 QSVWPSQLFVSNSVAGLDRL*PSVPSSVALGPI 97
+S+ PS+ V++ + LD PS+P S AL P+
Sbjct: 658 ESLLPSRPQVTSQMEQLDSTAPSIPQSSALAPL 690
>07_03_1690 -
28716998-28717091,28717203-28717897,28718264-28718446,
28718552-28719585,28719805-28719978,28720051-28720168,
28720339-28720521,28720647-28720739,28720981-28721166,
28722247-28722507
Length = 1006
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 384 RGKYVVCFDPLDGSSNIDCLVSVGSIFAIFRKKSHGEPVESDALQPGNELV 536
R KY+ DP+ S+N+ VS GS + I S G S L +L+
Sbjct: 316 RPKYLNIIDPIKSSNNLGRSVSKGSFYRIRGAFSFGAQNLSQILMLPTDLI 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,784,706
Number of Sequences: 37544
Number of extensions: 381672
Number of successful extensions: 1168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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