Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A10
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.0  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.2  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    25   6.8  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   9.0  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 518  HDTPASGSTASLTTTIHHHPKQSHSEAW*FNSSDYQEHGTVRKN-EKHLPPGSSRGQDRR 342
            H+T  S   +S +   HHH  + H+++   ++     H   RK+  +HL   SSR   + 
Sbjct: 1292 HETSTSSRKSSKSGEHHHHHNEGHADS--SSTRTSLAHQDSRKSLHRHLSRSSSRASKKP 1349

Query: 341  QV 336
             +
Sbjct: 1350 SI 1351


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 322  NDPVGQLADCGEQGNTVTHKGHHPDLD-SDTVAYLWTA 212
            ND + ++A  GE+  T   K  HP L  S +  YLW++
Sbjct: 2280 NDFIAEIAPEGEEFLTYLRKHSHPMLKLSSSDCYLWSS 2317


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +2

Query: 359 LTSLEVDVSHFY----VRCHALDNHLN*ITRLH 445
           L+S +V V HFY    +RC  +D+HL  I ++H
Sbjct: 151 LSSKKV-VIHFYHPDFIRCKIIDSHLEKIAKVH 182


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 116 YFHRRRLNPDPEDDETLNDGGSKLNFACYIIW 211
           YFH  R   +   ++ +   GSKL +   I W
Sbjct: 175 YFHTGRPPSEIYSEQKMKSSGSKLRYKSLIFW 206


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 584 GCDSSDPRRCQC 549
           GCD ++P RC+C
Sbjct: 267 GCDLNNPSRCEC 278


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
 Frame = -2

Query: 521 EHDTPASGSTASLTTTIH------HHPKQSHSEAW*FNSSDYQEHGTVRKNEK 381
           + D  A  ST SL    H        P+  H +A  F S DY+     R NE+
Sbjct: 496 QEDEDADISTVSLPEAAHLREERAESPRGGHYDAEEFPSEDYESRQPRRSNEE 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,861
Number of Sequences: 5004
Number of extensions: 51930
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)