Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A10
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    29   2.7  
Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   8.4  

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 256 HPDLDSDT-VAYLWTAPNDITGEVKFRASIIQSFVIFWVGIESPPVKI 116
           H +L S T V  +W AP   +G V FRAS+I++  I++   E   VK+
Sbjct: 125 HANLKSKTSVHMMWKAPEVSSGCVVFRASVIETKYIWFTEAEGLTVKL 172


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 90  FLRVFCLSIYHFIYLKQINCVCLKKKKKNS 1
           FL V CL+I +F YL  I  +C K+ +  S
Sbjct: 183 FLTVPCLAISYFAYLTIIFLICSKRNRNGS 212


>Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical
           protein T05A10.2 protein.
          Length = 194

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 421 LELNYQASLWLCLG*WCMVVV 483
           L +N  ++ W+ +G WC+VV+
Sbjct: 158 LNINIGSAFWMAVGAWCLVVI 178


>Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical
           protein C16C10.7 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 611 SKHVPVYDSGCDSSDPRR 558
           +K VP+Y  G DSSDPR+
Sbjct: 73  NKVVPIYGRGGDSSDPRK 90


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 524 TDLRWHFKRIDSDEGHCCHNRCRIQEHVY 610
           TD R   + +  D GH CH R R  + VY
Sbjct: 91  TDRRRRLQGVARDCGHACHLRLRSDDAVY 119


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 524 TDLRWHFKRIDSDEGHCCHNRCRIQEHVY 610
           TD R   + +  D GH CH R R  + VY
Sbjct: 91  TDRRRRLQGVARDCGHACHLRLRSDDAVY 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,338,525
Number of Sequences: 27780
Number of extensions: 307369
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)