Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_A09
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.31
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.71
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.71
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.2
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.2
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 6.6
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c... 25 8.7
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 323 PSLGQTEPPIFVSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSAS 502
PS + P SP+ +P P Y PSY + P P+ T P +A + S S
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYS 1614
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641
Query: 500 S 502
S
Sbjct: 1642 S 1642
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSATSPSYSPTSPSYSPTSPSYSPTSPSY 1634
Query: 500 S 502
S
Sbjct: 1635 S 1635
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIFV-SPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655
Query: 500 S 502
S
Sbjct: 1656 S 1656
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1604 PSYSATSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 500 S 502
S
Sbjct: 1663 S 1663
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669
Query: 500 S 502
S
Sbjct: 1670 S 1670
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1618 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676
Query: 500 S 502
S
Sbjct: 1677 S 1677
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683
Query: 500 S 502
S
Sbjct: 1684 S 1684
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690
Query: 500 S 502
S
Sbjct: 1691 S 1691
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697
Query: 500 S 502
S
Sbjct: 1698 S 1698
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704
Query: 500 S 502
S
Sbjct: 1705 S 1705
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711
Query: 500 S 502
S
Sbjct: 1712 S 1712
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718
Query: 500 S 502
S
Sbjct: 1719 S 1719
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725
Query: 500 S 502
S
Sbjct: 1726 S 1726
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 500 S 502
S
Sbjct: 1733 S 1733
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739
Query: 500 S 502
S
Sbjct: 1740 S 1740
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 323 PSLGQTEPPIF-VSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSA 499
PS T P SPS P P Y +P SY + P P+ T P + + S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746
Query: 500 S 502
S
Sbjct: 1747 S 1747
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.31
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 323 PSLG---QTEPPIFVSPSNLPP--PPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTAL 487
P LG +T P +P +LPP PP APPS P P+ PI P+ +
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 320 RPSLGQTEPPIFVSPSNLPPPP 385
+P QT PIF S S PPPP
Sbjct: 223 QPEFQQTTSPIFSSSSTPPPPP 244
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.71
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 344 PPIFVSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPI 475
PP+ +PS +PP PK APP + V V P PA P+
Sbjct: 1083 PPV-PAPSGIPPVPKPSVAAPPVPKPSVAV--PPVPAPSGAPPV 1123
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 323 PSLGQTEPPIFVSPSNLPPPPKYECMAP--PSYEEVVGVHYPNYPAQPITQP 472
P PP+ V PS PP PK AP P+ V P+ A P+ P
Sbjct: 1124 PKPSVAAPPVPV-PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +2
Query: 323 PSLGQTEPPIFVSPSNLPPPPKYECMAP--PSYEEVVGVHYPNYPAQPITQPIT 478
P PP+ S +PP PK P P E V P+ P+ P T
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 344 PPIFVSPSNLPPPPKYECMAPP 409
PP+ +PS PP PK APP
Sbjct: 1112 PPV-PAPSGAPPVPKPSVAAPP 1132
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 341 EPPIFVSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPI-TQP 472
+ P++V P+ PPP + P Y + + V Y QP+ QP
Sbjct: 1038 QSPLYVQPTGFQPPPSALPIQPTGYMQPIPVQATGY--QPLMVQP 1080
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 469 LSYRLSWVIWVVDADYFFVAGRCHAFIFGWGR*VGRADEN 350
L W ++VV+ + V + H F G+ R R +EN
Sbjct: 323 LDASFGWTVFVVENGHVQVESKSHGFNLGYRRMASRRNEN 362
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 324 HHWDRPNHLFSSAL 365
HHWD N LF +AL
Sbjct: 82 HHWDIANELFDTAL 95
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 347 PIFVSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQP 472
P+ P PPP PS+ V + PN P QPI++P
Sbjct: 146 PVSCQPVLRPPPVPQV----PSHWYPVSLPSPNLPHQPISKP 183
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Frame = +2
Query: 422 VVGVHYPNYPAQPITQPITTALAQSASXXXXXXXXXXXXVPETVITVS--TDATRTEVPV 595
VV P P+T TT S P TV+T S T + T P
Sbjct: 1415 VVSTVVPGSTVYPVTHVTTTTGVSGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPA 1474
Query: 596 ARS 604
+
Sbjct: 1475 TET 1477
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = +2
Query: 323 PSLGQTEPPIFVSPSNLPPPPKYECMAPPSYEEVVGVHYPNYPAQPITQPITTALAQSAS 502
P GQ PI ++P P P + P + + PN A P+T P + Q+A
Sbjct: 232 PMAGQ---PIAIAPV---PAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQ 285
Query: 503 XXXXXXXXXXXXVPE 547
VP+
Sbjct: 286 PVPMTSSPAMAVVPQ 300
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 320 RPSLGQTEPPIFVSPSNLPP--PPKYECMAPPSYEEVVGVHYPNYPAQPITQPITT 481
+P+ Q+ P + ++PS+LPP P + PS V + P P P TT
Sbjct: 443 QPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS-NLVPSQNAPFIPGTSAPLPPTT 497
>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
2|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 325 WSPSRPHIHSPLLRIP 278
WS +RPHI S LLR+P
Sbjct: 262 WS-TRPHIASKLLRLP 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,548
Number of Sequences: 5004
Number of extensions: 37023
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -