Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_A07
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 28 1.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.1
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 2.8
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 4.8
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 26 4.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 6.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 8.5
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 8.5
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.9 bits (59), Expect = 1.2
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +1
Query: 40 KYIKKETIKMSLNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLN 219
+Y+++E + + IK I A C Y + Y Q+ + +S + + T+N
Sbjct: 1211 EYMEREDHTLPI-PIKVISAHASKCNVYAKALHYTELQFVQE-TKEEVSISTIESLITIN 1268
Query: 220 KQKKISKAMKAYLERAKEHDEFMKRQQVEYKL 315
+ S A L+ KEH +F ++ KL
Sbjct: 1269 NHLQQSDAAVGMLQYTKEHKQFSLKETWYEKL 1300
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 214 LNKQKKISKAMKAY-LERAKEHDEFMKRQQVEYKLGKRHLANM 339
L +K++ ++AY + K EF KRQ YK+ ++ LA +
Sbjct: 735 LQNEKELRSKLEAYHINCNKVIKEFSKRQTARYKIIEKELAQI 777
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 497 PASSNSAALRAGNTSSGGFMRGRAAESYIPLGNKYSIARSTSF 369
P S+ S R G+ GG RG + P GN YS R +
Sbjct: 933 PRSNASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGY 975
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 175 TNISDNNLTDWETLNKQKKISKAMKAYLERAKEHDEFMKR---QQVEYKLGKRHLA 333
+N S + L W T + + + +Y A + ++ KR Q+ Y LG+ H+A
Sbjct: 952 SNSSADLLDAWVTNWSRNGVYDGLNSYPNFANDKQQYEKRFRQSQLSYNLGRLHIA 1007
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 73 LNSIKRIIPTAKFCFYYRNPIGYFSSQYKSKFITTNISDNNLT 201
L K +I +A FYYR+PI SKF ++ +T
Sbjct: 221 LQKNKNLISSAVNAFYYRDPIDENYCDRMSKFNQNDLVTTTIT 263
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Frame = +1
Query: 205 WETLNKQKKISKAMKAYLER-AKEHDEFMKRQQVE--------YKLGKRHLANMMGEDPE 357
WE KQ K + A LE K+ ++F+K + +LA+ DP+
Sbjct: 197 WEEHQKQLKNAGLEPASLEEYQKQWEDFLKSNNISDDPYTSSVNSFANDNLAHNKNIDPQ 256
Query: 358 TFTQKDVDRAIE 393
F D D +E
Sbjct: 257 IFQHSDTDNVVE 268
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.4 bits (53), Expect = 6.4
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 347 KIQRLSRKKMLIELLSIYSLVEYMTLLPVLS*SLRKKYFQHAKLPNSTKPAGRIIFYFTL 526
+I RLS + L +L S+Y V+ + P + +LRK +K + F T+
Sbjct: 1147 EIPRLSNRPKLEDLQSLYKDVKLLPFQPKETETLRKVVDLASKFRQEMQALAHNPFGLTM 1206
Query: 527 GNLISLSFYM 556
+ FY+
Sbjct: 1207 AEVPLARFYL 1216
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 169 ITTNISDNNLTDWETLNKQKKISKAMKAYLERAKEHDE 282
I ++S+ +T+ + +NK+ K+ +E+ K H+E
Sbjct: 20 IVDHVSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEE 57
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 208 ETLNKQKKISKAMKAYLERAKEHDEFMKRQQVE 306
E +KQK++ + E+ K EF+K Q+ E
Sbjct: 517 EAWSKQKEVKEKRNTRREKRKSKKEFLKAQKNE 549
>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +1
Query: 268 KEHDEFMKRQQVEYKLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYDSAARPLMKP 447
K +DE + + + K R + MG+ + + R E L ++D ++ P ++P
Sbjct: 26 KAYDEELTQARCNAKKLMRRFNDTMGDLENVGPAELIKRRAELLAEVFVFDESSAPEIEP 85
Query: 448 P 450
P
Sbjct: 86 P 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,868
Number of Sequences: 5004
Number of extensions: 47253
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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