Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_A07
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1052 - 23962374-23963369 29 2.8
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 2.8
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 29 3.8
05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266... 29 3.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.8
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547... 28 5.0
08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673... 28 6.6
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 28 6.6
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 27 8.7
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 27 8.7
>08_02_1052 - 23962374-23963369
Length = 331
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 506 CGLPASSNSAALRAGNTSSGGFMRGRAAESYIPLGN 399
CGL AS+ SAA A T+S RGR +Y +GN
Sbjct: 172 CGLHASATSAAAAAA-TASPAATRGRGRFAYAWVGN 206
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +1
Query: 139 YFSSQYKSKFITTNISDNNLTDW-----ETLNKQKKISKAMKAYLERAKEHDEFMKRQQV 303
YF ++ K+ +++L DW E+ N+ + +++ ERA E+D+ K +Q
Sbjct: 200 YFENERKAGEDRIKRQEDSLRDWDKKLKESQNRILDLQRSLNDREERANENDKLFKIKQE 259
Query: 304 EYKLGKRHL 330
E + K+ L
Sbjct: 260 ELEEAKKAL 268
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 217 NKQKKISKAMKAYLERAKEHDEFMKRQQVEYKLGKRHLANMMGEDPETFTQKDVDRAIE 393
N++KK +K+ +A AKE +R + + K+H + TF++K R E
Sbjct: 266 NREKKQAKSREAAARHAKETAMARERWKSAKDVAKKHAVGLQSSLSRTFSRKKTLRTHE 324
>05_01_0338 +
2665412-2665564,2665647-2665766,2666344-2666397,
2666583-2666660,2667608-2667652,2668327-2668434,
2668629-2668706,2669352-2669457,2669622-2669680,
2670465-2670564,2670932-2671011,2671132-2671188,
2671321-2671424,2671799-2671886,2671971-2672056,
2672140-2672185,2672246-2672317,2672541-2672601,
2672692-2672936
Length = 579
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 145 SSQYKSKFITTNISDNNLTDWETLNKQKKISKAMKAYLER-AKEHDEFMKRQQVEYKLGK 321
SS K + + + ++ ++D+E L + K ++ +K Y A ++ ++Q+ G+
Sbjct: 75 SSSRKDRGLAVDFKESQVSDFEDLEEDKFLNAVVKVYCTHIAPDYGLPWQKQRQHASTGR 134
Query: 322 RHLANMMGEDPETFTQKDVDRAIE 393
+ G+D + + K + R IE
Sbjct: 135 QVKVKRRGDD-KKYIAKVLARGIE 157
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +1
Query: 409 GIYDSAARPLMKPPEEVFPARKAAEFDEAGRPHHFL 516
G D A P KPPEEV RK P HF+
Sbjct: 858 GAADDAPAPAQKPPEEVDSKRKRVMPRFPNLPAHFM 893
>04_04_0822 +
28352941-28353825,28353863-28354016,28354714-28354754,
28355060-28355310,28355411-28355591,28356138-28356323,
28356396-28356569,28356992-28357150,28357424-28357501,
28357612-28357748,28357980-28358044,28358115-28358148,
28358216-28358372,28359135-28359196,28360041-28360118,
28360940-28361042
Length = 914
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 289 KRQQVEYKLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIY 417
KRQ Y + R +AN ++ KDVDR + L+P G +
Sbjct: 612 KRQISNYFMQFRKIANHPLLIRRIYSDKDVDRIAKLLYPKGAF 654
>08_01_0734 +
6729401-6729743,6729997-6730190,6730275-6730461,
6730880-6731073,6731435-6731827,6731913-6731978,
6732061-6732429,6732517-6732568,6733393-6733397
Length = 600
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 181 ISDNNLTDWETLNKQKKISKAMKAYLERAKEHDEFMKRQQVE 306
I NN+ + K+++++K+ + L A H E KR++V+
Sbjct: 141 IKKNNIALQAIIQKRRELAKSSEGNLGSASTHQETRKRKRVD 182
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 115 FYYRNPIGYFSSQYKSKFITTNISDNNLTDWETLNKQKKISKAMKAYLERAKEHDEFMK- 291
FYYR F +K + ++D L+ + ++ KAM AYL +E D+F
Sbjct: 590 FYYR-----FGKPIPTKGMQAVMTDKQAAGELYLHVKSEV-KAMIAYLLEKREEDKFRSI 643
Query: 292 RQQVEYKLGKRHLANMMGEDP 354
++ Y+LG H + + DP
Sbjct: 644 LPRILYQLGCGHDSEIPSFDP 664
>06_02_0041 + 10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 403 PSGIYDSAARPLMKPPEEVFPARKAA 480
PSG++DS + PP + P R AA
Sbjct: 1038 PSGVFDSTDQECRLPPASINPKRAAA 1063
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 310 KLGKRHLANMMGEDPETFTQKDVDRAIEYLFPSGIYDSAARPLMKPPEE 456
K K + E PE+F + DV IE SG ++ P+++PP +
Sbjct: 220 KYAKEVTTVLPSESPESFLENDVSDFIEKEVDSG--ETFELPILEPPSQ 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,363
Number of Sequences: 37544
Number of extensions: 260291
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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