Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_A04
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.31
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 29 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 2.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 3.9
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 3.9
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 25 3.9
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 3.9
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz... 25 3.9
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.7
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 6.7
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 24 8.9
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 24 8.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 24 8.9
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 8.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 24 8.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 24 8.9
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 24 8.9
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 29.1 bits (62), Expect = 0.31
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = -1
Query: 370 FALLISRAAFAFLLDQSNLPPKFEVSP--AGPKTLVPYACPSNLPRSSLKNCRVYPALPN 197
F +S ++ +F + +P KF ++P A + P + +S+ + + A+P
Sbjct: 126 FTTSVSASSDSFP-NSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPF 184
Query: 196 NPSSFCPSVPNTFPLP 149
P +F P V N PLP
Sbjct: 185 TPHAFVPPVNNASPLP 200
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 28.7 bits (61), Expect = 0.41
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 57 MPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGKV 164
+PPS+ +YP Y FS AR R V K+I G++
Sbjct: 667 VPPSHNGQYPGLYLFSNPARMVRPV---KHISTGEL 699
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 2.9
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -1
Query: 298 VSPAGPKTLVPYACPSNLPRSSLKNCRVYPALPNNP-SSFCPSVPNTFP 155
V P P + PS+ P ++ PA+PN P S PSV P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPP 1506
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -1
Query: 217 VYPALPNNPSS-FCPSVPNTFP 155
V P +P +PSS F P P TFP
Sbjct: 306 VSPNIPVSPSSSFVPMYPTTFP 327
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 313 PPKFEVSPAGPKTLVPYACPSNLPRSSLKNCRVYPAL 203
PP+F S AG + PS+L SS+ + RV P++
Sbjct: 143 PPQFFHSEAGERPTPSVGAPSSL-ASSMDSVRVAPSM 178
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 3.9
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 205 KLDTRGSFSMTIAVSWKGKHTAPGFWVRQATPQTSEAGWI-GLIRMQTLPLISAKQIGGR 381
+LDT+G F + I S G+ G Q ++E G + ++ T P+ S G
Sbjct: 140 ELDTKGKFGLCIDYSPNGRFIVSGHQTGQLFLISTETGRLFHVLSGHTSPVRSVAFSPGS 199
Query: 382 PNLSASG 402
L+A+G
Sbjct: 200 TLLAAAG 206
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 212 SSFTE*SIVILSECTEYFSVAY 147
S FTE S + SEC YF+ +
Sbjct: 1273 SDFTEDSFTLTSECLRYFNYGH 1294
>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 265
Score = 25.4 bits (53), Expect = 3.9
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = -1
Query: 328 DQSNLPPKFEVSPAGPKTLVPYACPSNLPRSSLKNCR-VYPALPNNPSSFCPSVPNTF 158
+++N+PP P GP + P+ K R +P P+N P + F
Sbjct: 207 NRTNIPPGARYDPTGPGDFRGFGRDERKPQFPFKGPRSQFPGEPDNDDFMPPGSSDMF 264
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 331 LDQSNLPPKFEVSPAGPKTLVP 266
LD S L PKFEV+P L P
Sbjct: 282 LDDSYLSPKFEVAPGQIVELSP 303
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 223 CRVYPALPNNPSSFCPSVPNTFP 155
CRV P LP+ S +C + FP
Sbjct: 484 CRVRPLLPSEESEYCIADVLQFP 506
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 238 SSLKNCRVYPALP-NNPSSFCPSVPNTFP 155
S LK C A P +N S PS PN FP
Sbjct: 237 SILKPCMPSIASPTSNRLSHAPSTPNLFP 265
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 24.2 bits (50), Expect = 8.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 54 SMPPSYKERYPEYYKFSKQARHPRDVTWDKNIGNGK 161
SM +Y+ R + FSK H RDV K G K
Sbjct: 145 SMKAAYRIR-KTFLSFSKMMEHVRDVQHKKETGEIK 179
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.2 bits (50), Expect = 8.9
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 TWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFNDDRGKLEGQAYG-TRVLGPAGDTSNF 308
TW K+ GN G D L + G+ R + +G + RV G G S
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVHGSVGGMSGI 1721
Query: 309 GG 314
G
Sbjct: 1722 VG 1723
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 306 SLRCRLPDPKPW 271
S CRLP P+PW
Sbjct: 265 SFTCRLPLPEPW 276
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.2 bits (50), Expect = 8.9
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 TWDKNIGNGKVFGTLGQNDDGLFGKAGYTRQFFNDDRGKLEGQAYG-TRVLGPAGDTSNF 308
TW K+ GN G D L + G+ R + +G + RV G G S
Sbjct: 1662 TWKKSFGNANTNLKYGLEDMSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVHGSVGGMSGI 1721
Query: 309 GG 314
G
Sbjct: 1722 VG 1723
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 256 PSNLPRSSLKNCRVYPALPNNPSSFCPSVPNTFP 155
P N R + ++ R P+ PN ++F S+ + P
Sbjct: 77 PRNKSRPASRSDRFIPSRPNTANAFVNSISSDVP 110
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 247 LPRSSLKNCRVYPALPNNPSSFCPSVPNTFPLPMFLSHV 131
+P L N + A+P P+ P +P +P+P + ++
Sbjct: 573 IPSIVLPNSAMPSAMPMYPTPTMPYIPVGYPVPGYTPYM 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,054,330
Number of Sequences: 5004
Number of extensions: 45170
Number of successful extensions: 161
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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