Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A04
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   0.84 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 328 LIRMQTLPLISAKQIGGRPNLSASGAG 408
           L++M  LPLI +  I G   L   G+G
Sbjct: 106 LLKMFILPLIVSSLISGMAQLDPKGSG 132


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 70  IKKGILNIINSRSKPVTLETSRGTRT*ATEKYSV--HSDKMTMDYSVKLDTRGSFSMTIA 243
           +++ +L++  +  +   L  S   +   +  Y+V  H+      YS  L+      M+ +
Sbjct: 435 LQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSF-LERLNLIFMSSS 493

Query: 244 VSWKGKHTAPGFWVRQAT 297
           + W   HT    W R+ T
Sbjct: 494 LQWSSTHTLDVAWRRKVT 511



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 187 TMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFWVRQATPQTSEAGWIG 327
           T D S+  D   S    + +SW  + T  GF   + + +  +  W+G
Sbjct: 222 TDDDSIDFDRMNS----LGLSWLDQLTNLGFLGMKESVEVDQLSWLG 264


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 70  IKKGILNIINSRSKPVTLETSRGTRT*ATEKYSV--HSDKMTMDYSVKLDTRGSFSMTIA 243
           +++ +L++  +  +   L  S   +   +  Y+V  H+      YS  L+      M+ +
Sbjct: 473 LQRCLLSLEKTYERDTCLLASDALKQILSAAYNVELHNSSPFSIYSF-LERLNLIFMSSS 531

Query: 244 VSWKGKHTAPGFWVRQAT 297
           + W   HT    W R+ T
Sbjct: 532 LQWSSTHTLDVAWRRKVT 549



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 187 TMDYSVKLDTRGSFSMTIAVSWKGKHTAPGFWVRQATPQTSEAGWIG 327
           T D S+  D   S    + +SW  + T  GF   + + +  +  W+G
Sbjct: 260 TDDDSIDFDRMNS----LGLSWLDQLTNLGFLGMKESVEVDQLSWLG 302


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 EASPSP*RRHVGQEHRQRKS 163
           EA P P  +   +EH+++KS
Sbjct: 59  EALPQPISKRKDKEHKKKKS 78


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 EASPSP*RRHVGQEHRQRKS 163
           EA P P  +   +EH+++KS
Sbjct: 59  EALPQPISKRKDKEHKKKKS 78


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 210 GYTRQFFNDD 239
           G  RQF+NDD
Sbjct: 223 GIARQFYNDD 232


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 196 NPSSFCPSVPNT 161
           NP +F PS PN+
Sbjct: 59  NPGNFSPSGPNS 70


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 196 NPSSFCPSVPNT 161
           NP +F PS PN+
Sbjct: 59  NPGNFSPSGPNS 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,079
Number of Sequences: 438
Number of extensions: 3338
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)