Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A02
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0187 - 6447189-6448532                                           26   4.6  
01_06_0723 + 31501900-31502808,31502846-31503295                       26   4.6  
07_03_0237 - 15606012-15606312,15606593-15606606,15606979-156074...    26   6.1  
11_06_0087 - 19919224-19922304                                         25   8.0  
09_02_0445 + 9446171-9447496                                           25   8.0  

>10_02_0187 - 6447189-6448532
          Length = 447

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 67  LRCEGTCGRWASLAA 23
           +RC  TC RWAS+ A
Sbjct: 59  VRCAATCRRWASVVA 73


>01_06_0723 + 31501900-31502808,31502846-31503295
          Length = 452

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 67  LRCEGTCGRWASLAA 23
           +RC  TC RWAS+ A
Sbjct: 65  VRCAATCRRWASVVA 79


>07_03_0237 -
          15606012-15606312,15606593-15606606,15606979-15607469,
          15608444-15608483
          Length = 281

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 71 LSPMRRYLRSLGFIGGH 21
          L+P+  Y+R  G IGGH
Sbjct: 9  LTPVHDYIRDAGIIGGH 25


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 178  KTNWMLCFFF*INIVLDKVHPRLCICLRTYSGG 80
            K +W LC+F  I+ + D+++  L +  + +  G
Sbjct: 994  KKSWRLCYFCFIDRIYDQIYVFLVLTCKRFGRG 1026


>09_02_0445 + 9446171-9447496
          Length = 441

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 85  GGSLACLRCEGTCGRWASLAA 23
           G SLA LR    C RW  L A
Sbjct: 47  GDSLALLRAAAACKRWRRLVA 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,579,558
Number of Sequences: 37544
Number of extensions: 108514
Number of successful extensions: 289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)