Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_A01
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    27   0.82 
SPCC24B10.13 |skb5||Shk1 kinase binding protein 5|Schizosaccharo...    26   1.4  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   2.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   5.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   5.8  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    23   7.7  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    23   7.7  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 0.82
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 199 WTSFDNAISNVLTDSLNLLEKLP 131
           W SF   +S+VL ++ NL++ LP
Sbjct: 729 WLSFSEILSSVLINTKNLIDGLP 751


>SPCC24B10.13 |skb5||Shk1 kinase binding protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 247 FLTLSNICCLADNSDGW-TSFDNA 179
           F T   +C L+++SDGW  ++D+A
Sbjct: 101 FTTGQRLCILSESSDGWLIAYDDA 124


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 226 KYCLGLRNSI*YLLTKNC 279
           KY    RN I YLLTK C
Sbjct: 424 KYSQATRNHIGYLLTKQC 441


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 196  TSFDNAISNVLTDSLNLLEKLP 131
            ++F N +SN++TD+  L++  P
Sbjct: 3463 STFTNMVSNLITDARELMKLTP 3484


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 199  WTSFDNAISNVLTDSLNLLEK 137
            WTS+DN I++VL  + +  +K
Sbjct: 1414 WTSYDNEIASVLQTASSQSDK 1434


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 119 PEPKWKLFKKIERVGQNIRDG 181
           PE KW+ F +I+ +    R+G
Sbjct: 89  PETKWQRFARIKGIAPKKREG 109


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 220 LADNSDGWTSFDNAISNVLTDSL 152
           L DN   W+   ++IS++LT +L
Sbjct: 670 LGDNKSQWSDMVSSISSILTFNL 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 975,944
Number of Sequences: 5004
Number of extensions: 16679
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)