Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_P24
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816 92 2e-19
05_04_0264 + 19537582-19537919,19539670-19539826,19539939-195400... 90 8e-19
03_01_0257 + 1994645-1995061 32 0.31
05_01_0204 - 1461676-1462033,1462173-1462240 30 1.3
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 30 1.3
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548... 29 1.7
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 29 1.7
11_06_0235 + 21588212-21589029,21589426-21591358 28 3.9
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122 28 5.1
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 28 5.1
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 6.8
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 27 6.8
08_01_0819 + 7949938-7950678 27 8.9
05_04_0234 + 19282196-19282818,19282948-19283347 27 8.9
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 27 8.9
>03_03_0024 + 13843517-13843620,13846424-13846580,13846667-13846816
Length = 136
Score = 92.3 bits (219), Expect = 2e-19
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 PYTGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLV 182
P TG +NK Y +G+Y C C L+ S K+DSGCGWPAF + L +++
Sbjct: 37 PGTGEYNKFYGDGVYNCAGCGTPLYKSTTKFDSGCGWPAFFEGLPG---AINRTPDPDGR 93
Query: 183 RTEVRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPA 302
R E+ C+ C HLGHVF + TPT +R C+NS S+ F PA
Sbjct: 94 RVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSIKFTPA 135
>05_04_0264 +
19537582-19537919,19539670-19539826,19539939-19540092,
19540281-19540417
Length = 261
Score = 90.2 bits (214), Expect = 8e-19
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = +3
Query: 3 PYTGCFNKVYDEGLYVCIVCKQDLFSSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLV 182
P TG ++K++ EG+Y C C L+ S K++SGCGWPAF + + +
Sbjct: 115 PGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNSGCGWPAFYEGFPG---AIARTPDPDGR 171
Query: 183 RTEVRCSKCSAHLGHVF--DDGPTPTRKRFCINSASLDFIPAEE 308
R E+ C+ C HLGHVF + TPT +R C+NS SL FIPA E
Sbjct: 172 RIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSISLKFIPASE 215
>03_01_0257 + 1994645-1995061
Length = 138
Score = 31.9 bits (69), Expect = 0.31
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 183 RTEVRCSKCSAHLGHVFDDGP 245
RT + C C LG+V+DDGP
Sbjct: 76 RTRISCDACGRLLGYVYDDGP 96
>05_01_0204 - 1461676-1462033,1462173-1462240
Length = 141
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 183 RTEVRCSKCSAHLGHVFDD 239
RT + C KC AH+G +DD
Sbjct: 89 RTRLLCRKCGAHVGFAYDD 107
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 174 GLVRTEVRCSKCSAHLGHVFDDGPTPT 254
G +R E C +C+AH+ F P PT
Sbjct: 30 GRIRAEANCPRCAAHMSVQFSLQPLPT 56
>11_01_0671 -
5479240-5479286,5480399-5480588,5480669-5480824,
5481005-5481931
Length = 439
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Frame = -2
Query: 365 ISKKYKNFINLCTFDFV-FPFFSRNEVQGSRIYTKTFSGGCW---PIIEHMPQMSGALGA 198
+ K + TFDF F R + + T CW P +E MP + A
Sbjct: 192 VEKILSQSVKYLTFDFPEFSEHHRTHIYAPNLITLRLDD-CWGRVPFLESMPSLIAAFVR 250
Query: 197 PHFGSHQTCT 168
PH S C+
Sbjct: 251 PHRDSDDLCS 260
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 135 AREKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFD 236
A EK +H+ GL+R++VRC+ CS H + FD
Sbjct: 231 AYEKSLVHR-IFGGLLRSQVRCTTCS-HCSNKFD 262
>11_06_0235 + 21588212-21589029,21589426-21591358
Length = 916
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 200 LQVLRSSGACVR*WANTHPKTFLYKFCFLGLH 295
L++L S V W P L+KFC GLH
Sbjct: 726 LEILFGSWVLVSHWEGWEPPRQLHKFCMDGLH 757
>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
Length = 530
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 269 TKTFSGGCWPIIEHMPQMSGALGAPHFGSHQTCTCIFM 156
T T W ++ ++ M+ PH GSH T C+F+
Sbjct: 382 TLTVDNNTWRVLRNL--MALEQNNPHLGSHVTAYCLFV 417
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 135 AREKVTLHKDTSAGLVRTEVRCSKCSAHLGHVFD 236
A EK +HK G +R++V+C++CS H + FD
Sbjct: 144 AYEKSLVHK-IFGGRLRSQVKCTQCS-HCSNKFD 175
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 162 DTSAGLVRTEVRCSKCSAHLGHVFDDGPTPTRKRFCINSAS 284
D S + + C+KC+ + +F+ GP F NS S
Sbjct: 77 DASCAALLKPILCAKCNPYSAELFNAGPNIRTIPFLCNSTS 117
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 78 SSKNKYDSGCGWPAFNDVLAREKVTLHKDTSAGLVRTEVRCSKC 209
SS K +G P N V VTL G++ E RC +C
Sbjct: 142 SSPEKVPNGPVQPLANGVRKEPPVTLVHKNFQGILTNETRCLRC 185
>08_01_0819 + 7949938-7950678
Length = 246
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 156 HKDTSAG--LVRTEVRCSKCSAHLGHVFDDGPTPTRKRFCINSASL 287
H+ AG L+R RC + + ++ PTP R++ C S +
Sbjct: 71 HRPRCAGRMLLRVRRRCPRRDGRMPNIAATTPTPLRRKECSRSVKM 116
>05_04_0234 + 19282196-19282818,19282948-19283347
Length = 340
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 199 APSAPLIWGMCSMMGQHPPEN 261
AP P WG C Q+PP +
Sbjct: 162 APDGPFSWGYCFKQEQNPPSD 182
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 114 PAFNDVLAREKVTLHKDTSAGLVRTE-VRCSKCSAHLGHVFDDG 242
P F+ VLA H SAG++ E VR S+ G DDG
Sbjct: 249 PCFDGVLAAANFAAHSPFSAGVLMPEHVRNGDFSSGRGRSGDDG 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,568
Number of Sequences: 37544
Number of extensions: 311261
Number of successful extensions: 696
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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