Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P21
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    28   0.62 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   5.8  

>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 332 TYLLFCDVLIQNNFSKILTLAPNHSASCCLVCCNLKQCSSNNKRQIQ 192
           +YL+   + + N FS ++ L  +    CC    + KQC +N    IQ
Sbjct: 59  SYLILGYIGVLNAFSNVIALQISPLTECCQNYYSKKQCFANTTGLIQ 105


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 353 FPLRHVVTYLLFCDVLIQNNF 291
           +P+R++V  LLF  V +Q+ F
Sbjct: 318 YPIRYLVELLLFVSVALQSKF 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,302
Number of Sequences: 5004
Number of extensions: 26739
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)