Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P21
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573     31   0.35 
02_01_0412 - 3005600-3007759                                           29   1.4  
02_01_0411 - 2998806-3000938                                           28   3.3  
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340...    27   7.6  
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720...    27   7.6  

>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
          Length = 409

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 338 VVTYLLFCDVLIQNNFSKILTLAPNHSASCCLVCCNLKQCSSNNKRQIQAV 186
           ++T+  FCD L + + +++L  A N S+     C N    S+NN   I ++
Sbjct: 165 LLTHRAFCDALAEES-ARLLAAANNSSSITTTTCNNSNISSNNNNNNINSI 214


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -1

Query: 192 SSNRRIARMRAENGLQRSNLVLIVNSFNNL*RVTNNIHILRSAIRN 55
           S+NR   ++    G  +S + L + S+NN   +TN +HIL+S +RN
Sbjct: 382 SANRLHGQLTKNIGNLKSIIFLSI-SYNNFTNITNTLHILKS-LRN 425


>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -1

Query: 192 SSNRRIARMRAENGLQRSNLVLIVNSFNNL*RVTNNIHILRSAIRN 55
           S+NR   ++    G  +S   L + S+NN   +TN +HIL+S +RN
Sbjct: 372 SANRLHGQLSKNIGNLKSITFLSI-SYNNFTNITNTLHILKS-LRN 415


>05_01_0429 +
           3399266-3399708,3401320-3401382,3403919-3404345,
           3404863-3405141
          Length = 403

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 269 PNHSASCCLVCCNLKQCSSNNKRQIQAVIGE*QECGRKTAC 147
           P+  +  CL     + CS   +R I A++ E  E  +K AC
Sbjct: 144 PSRFSEICLHISASEYCSGVMQRSISAIVNEYIEAMKKLAC 184


>01_06_0237 +
           27770777-27771120,27771209-27771438,27771951-27772092,
           27772266-27772281
          Length = 243

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 17  KKRDYKAKRNYE*FLMALRKM*ILFVTRYKLLKEFTMRTRL 139
           +K D K   +YE   MAL KM   F+T    L++ + R RL
Sbjct: 165 RKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRL 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,477,687
Number of Sequences: 37544
Number of extensions: 148454
Number of successful extensions: 299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)