Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_P19
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 65 6e-12
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.008
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.096
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 31 0.13
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.17
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.22
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.29
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 29 0.51
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 29 0.68
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.68
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 0.89
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.2
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.1
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.7
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 26 3.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 3.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 4.8
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 4.8
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 4.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 4.8
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 6.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 6.3
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 6.3
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 25 8.3
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 65.3 bits (152), Expect = 6e-12
Identities = 37/82 (45%), Positives = 47/82 (57%)
Frame = +2
Query: 347 DLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEKMEADNRSVYVG 526
+L +K RV EME EA KL+ MQ ++D + T L +K D +SVYVG
Sbjct: 13 ELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVG 60
Query: 527 NVDYGATAEELEQHFHGCGSIN 592
NVDY T EEL+ HF CGS+N
Sbjct: 61 NVDYSVTPEELQSHFASCGSVN 82
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.1 bits (77), Expect = 0.008
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 479 SFEEKMEADNRSVYVGNVDYGATAEELEQHFHGCGSI 589
+F +++ + +V+VGN+ + AT ++L F GCG I
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDI 392
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.096
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +2
Query: 329 TGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEKMEAD- 505
TGAEV D+ A +E ++ + E + G P G + + S E EA
Sbjct: 49 TGAEVSDVTAEATEGKESSNGEDRHTKRLYE--STSAEGYPSGSRNKKSKS--ENSEASP 104
Query: 506 ----NRSVYVGNVDYGATAEELEQHFHGCGSI 589
N++VY+ + T +E+E+ F CG I
Sbjct: 105 APVINKAVYIQGLPLDVTVDEIEEVFKKCGVI 136
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 31.1 bits (67), Expect = 0.13
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 206 RQIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREME 385
+++ + E DD D D G G +N + E+P++ + +E E
Sbjct: 132 KELTAVTELDD--DEFDYKPKKGKKGKKAQNNNE---SEAAAPPEIPEVRVKTKKEKERE 186
Query: 386 E-EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEKMEADNRSVYVGNVDYGA 544
+ E EKL++ Q + K+ S G +S ++ + A+N S G G+
Sbjct: 187 KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAGS 240
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 446 SPPGLTSPLNMSFEEKMEADNRSVYVGNVDYGATAEELEQHFHGCGSI 589
S P T S + + + ++VGN+D+ T +L++HF G I
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 476 MSFEEKMEADNRSVYVGNVDYGATAEELEQHFHGCGSI 589
+S + E ++ ++YVGN+D + EE+ +HF G +
Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 509 RSVYVGNVDYGATAEELEQHFHGCGSIN 592
R V+VGN+ + A E L ++F CGSI+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSID 297
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.51
Identities = 18/67 (26%), Positives = 27/67 (40%)
Frame = +2
Query: 299 DNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNM 478
DNS DE+ A K R ++ E+ E + KQ G+P +
Sbjct: 164 DNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEGTP---VKEKKV 220
Query: 479 SFEEKME 499
+F EK+E
Sbjct: 221 AFAEKLE 227
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.7 bits (61), Expect = 0.68
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Frame = +2
Query: 326 MTGAEVPD-LAAIKARVREMEE----EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEE 490
+TG + D L A+KA+V+E EE E E++K++Q + ++ L +++S ++
Sbjct: 244 VTGEGMDDFLEAVKAKVKEYEEEYVPEMERMKEIQRQTKERQKEAQLSKLMKDMHVSKDK 303
Query: 491 K----MEADNRSVYVGNV-----DYGATAEELE 562
+ +D Y G + D G TAE+ E
Sbjct: 304 EDVGLTVSDAEDEYNGELVDPDEDDGLTAEDRE 336
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 506 NRSVYVGNVDYGATAEELEQHFHGCGSI 589
+R++Y+GN D T E L++ F G I
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 440 MGSPPGLTSPLNMSFEEKMEADNRSVYVGNVDYGATAEEL 559
MG PP SP+ + + + NR+VY+GN+ T EE+
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEI 339
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 0.89
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 344 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEKMEADNRSV 517
P + I + ME+ + K+ +TEV ++ S GL LN+ ADN V
Sbjct: 53 PKIIHIASDENWMEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 383 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSFEEKMEADNRSV--YVGNVDYGATAEE 556
+E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E
Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107
Query: 557 LEQHFHGCGSI 589
L+ HF G +
Sbjct: 108 LQLHFKRAGQV 118
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 400 IKTNAN*SGQTNEYGQSTRTNESTEHV 480
+ ++ N G +N YG NEST HV
Sbjct: 274 LPSSTNTYGPSNSYGYEININESTNHV 300
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 515 VYVGNVDYGATAEELEQHFHGCGSI 589
VYVGN+ + T E++ F CG I
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 254 QSNLNNHHFLPFPLFVENMNSALGYK 177
QSN N+ FLPF VEN+ + +K
Sbjct: 6 QSNSKNYVFLPFSKRVENLKIDVAHK 31
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/67 (17%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 224 AENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREME-EEAEK 400
++ D+Y D+ D+N++ G + ++S G + + + + V +E ++
Sbjct: 116 SQEDEYYDTSDSNYMFGLKHVYDFGEDSFKGYSGQFSSNIVEQIRLHPHVIAVERDQVVS 175
Query: 401 LKQMQTE 421
+K+++T+
Sbjct: 176 IKKLETQ 182
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 130 GHWHHNGFGYRMLVQCL*PSAEFMFSTNSGN 222
G W+ GFGY +L Q P EF+ T N
Sbjct: 1588 GRWNGQGFGYMVLTQ---PWREFVCKTTELN 1615
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +2
Query: 254 DNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQ 415
D++ L+G NG + +T S D + D I+ R+ E ++ K+++
Sbjct: 440 DDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELR 493
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 344 PDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSP 451
P+LA +AR +E E KLK + T ++ + P
Sbjct: 89 PELAHFEARCKESNVEMPKLKPVPTSWEQALQDNKP 124
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = +2
Query: 458 LTSPLNMSFEEKMEADNRSVYVGNVDYGATAEELEQHFHGCGSI 589
++ PL + + R +YV N+D+ +++E F G +
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQV 783
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 311 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQ 433
G D + +LAA +A ++ E EAE L+ +Q E++K+
Sbjct: 572 GQADTLATQREAELAAQRALKQKQESEAESLR-VQEEINKR 611
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/28 (28%), Positives = 20/28 (71%)
Frame = +2
Query: 371 VREMEEEAEKLKQMQTEVDKQMSMGSPP 454
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 281 RLFRPSDCCQSNLNNHHFLPFPLFVENMN 195
R + P D + +L + HFLPFP + ++
Sbjct: 781 RNYMPIDKNEISLRSVHFLPFPTYKSELD 809
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 190 AEFMFSTNSGNGRK**LFRFD*QQS----LGRN-KRFLEHD*QQSW 312
A F+ T + +K +FR D Q+ LGR KRF HD Q W
Sbjct: 250 AGFLVYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGW 295
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 311 GGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQ 409
G +++GAE D+AA+ +E EEA+ + +
Sbjct: 136 GDATDVSGAEQTDVAAVLPITQEAVEEAKPITE 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,755
Number of Sequences: 5004
Number of extensions: 40805
Number of successful extensions: 170
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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